Fish (ID 898089) - BioProject

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Accession: PRJNA898089 ID: 898089

Fish

Reference sequences for Australian freshwater fishes: Genome sequencing and assembly

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This project is a component of the Applied Genomics Initiative

This project is a component of the Threatened Species Initiative (TSI)

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41 additional projects are components of the Applied Genomics Initiative.

14 additional projects are components of the Threatened Species Initiative (TSI).

Reference genome datasets for Australian freshwater fishes to inform captive breeding and restocking programs, life history studies and ecological research into the status of populations with a focus on the native and exotic species of the Murray-Darling River Basin.

Accession	PRJNA898089
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 4-Nov-2022 CSIRO Applied Genomics Initiative
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	119
WGS master	40
Genomic DNA	79
SRA Experiments	56
Protein Sequences	1027
Other datasets
BioSample	76
PopSet	2
Assembly	40

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

1
39
40

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_036025115.1	JAVQJX000000000	SAMN31702991	CES-807	Ambassis agassizii
GCA_036024835.1	JAVQJR000000000	SAMN31702992	CES-044	Bidyanus bidyanus
GCA_037022325.1	JAVRDM000000000	SAMN31702994	CES-806	Carassius auratus
GCA_036024015.1	JAVQJG000000000	SAMN31702995	CES-017	Craterocephalus amniculus
GCA_036023975.1	JAVQJE000000000	SAMN31702996	CES-007	Craterocephalus fluviatilis
GCA_036025135.1	JAVQJT000000000	SAMN31702997	CES-027	Craterocephalus stercusmuscarum fulvus
GCA_036023955.1	JAVQJC000000000	SAMN31702998	CES-005	Cyprinus carpio
GCA_036024995.1	JAVQJV000000000	SAMN31702999	CES-009	Gadopsis bispinosus
GCA_036023855.1	JAVQJF000000000	SAMN31703001	CES-008	Gadopsis marmoratus
GCA_036024875.1	JAVQJQ000000000	SAMN31703003	CES-021	Galaxias arcanus
GCA_036023535.2	JAVQIZ000000000	SAMN31703004	CES-010	Galaxias brevipinnis
GCA_036024135.1	JAVQJI000000000	SAMN31703005	CES-022	Galaxias fuscus
GCA_036023455.1	JAVQIY000000000	SAMN36368149	-	Galaxias olidus
GCA_026901105.3	JAPMUY000000000	SAMN31703006	CES-804	Galaxias olidus
GCA_036024655.1	JAVQJO000000000	SAMN31703007	CES-023	Galaxias oliros
GCA_036024795.1	JAVQJS000000000	SAMN31703008	CES-024	Galaxias rostratus
GCA_036025515.1	JAVQKA000000000	SAMN36368150	-	Hypseleotris acropinna
GCA_036025885.1	JAVQKG000000000	SAMN36368151	-	Hypseleotris bucephala
GCA_036025235.1	JAVQJU000000000	SAMN31703011	CES-506	Hypseleotris gymnocephala
GCA_036025195.1	JAVQJW000000000	SAMN31703015	CES-805	Hypseleotris klunzingeri
GCA_036024235.1	JAVQJJ000000000	SAMN36368152	-	Hypseleotris klunzingeri
GCA_036025355.1	JAVQJZ000000000	SAMN31703016	CES-046	Leiopotherapon unicolor
GCA_036024715.1	JAVQJP000000000	SAMN36368153	-	Maccullochella macquariensis
GCA_036025615.1	JAVQKB000000000	SAMN31703021	CES-028	Melanotaenia fluviatilis
GCA_036024575.1	JAVQJN000000000	SAMN36368154	-	Melanotaenia splendida tatei
GCA_036025915.1	JAVQKE000000000	SAMN31703024	CES-736	Misgurnus anguillicaudatus
GCA_036025875.1	JAVQKH000000000	SAMN31703025	CES-006	Mogurnda adspersa
GCA_036023655.1	JAVQJD000000000	SAMN31703026	CES-012	Nannoperca australis
GCA_036024295.1	JAVQJL000000000	SAMN31703027	CES-011	Nannoperca obscura
GCA_036025975.1	JAVQKI000000000	SAMN31703029	CES-002	Nematalosa erebi
GCA_036025815.1	JAVQKF000000000	SAMN31703030	CES-001	Neosilurus hyrtlii
GCA_036024535.1	JAVQJH000000000	SAMN31703031	CES-417	Oncorhynchus mykiss
GCA_036025635.1	JAVQKD000000000	SAMN31703034	CES-014	Philypnodon grandiceps
GCA_036025475.1	JAVQKC000000000	SAMN31703036	CES-013	Philypnodon macrostomus
GCA_036024475.1	JAVQJM000000000	SAMN36368155	-	Porochilus rendahli
GCA_036025375.1	JAVQJY000000000	SAMN36368156	-	Retropinna semoni
GCA_036024515.1	JAVQJK000000000	SAMN36368157	-	Rutilus rutilus
GCA_036024195.1	JAVQJB000000000	SAMN31703042	CES-104	Salmo trutta
GCA_036023675.1	JAVQJA000000000	SAMN31703043	CES-052	Tandanus tandanus
GCA_037022345.1	JAVRDN000000000	SAMN36368158	-	Tinca tinca

SRA Data Details

Parameter	Value
Data volume, Gbases	1,877
Data volume, Tbytes	0.61

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Fish

Reference sequences for Australian freshwater fishes: Genome sequencing and assembly

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