Metagenome-assembled genome: SRR3173844_bin.9_meta... - BioSample

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Result Filters

Organism: Romboutsia timonensis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Romboutsia

Attributes

collection date	2013-10-05
broad-scale environmental context	Pig digestive system
local-scale environmental context	Colon
environmental medium	Digesta
geographic location	China
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	discovery gut microbiota composition association with fatness deposition in pigs
sample name	SRR3173844_bin.9_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-13
ENA-LAST-UPDATE	2022-07-13
External Id	SAMEA110341211
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-13T21:13:50Z
INSDC last update	2022-07-13T21:13:50Z
INSDC status	public
Submitter Id	SRR3173844_bin.9_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	91.2
completeness software	CheckM
contamination score	1.76
geographic location (latitude)	28.16
geographic location (longitude)	116.27
metagenomic source	pig gut metagenome
sample derived from	SAMN04448869
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3173844 of study SRP070105.