Metagenome-assembled genome: min17_eukbin1

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Result Filters

Organism: Blastocystis sp. subtype 1
cellular organisms; Eukaryota; Sar; Stramenopiles; Bigyra; Opalozoa; Opalinata; Blastocystidae; Blastocystis; Blastocystis sp. subtypes

Attributes

collection date	2019
broad-scale environmental context	human-associated habitat
local-scale environmental context	human-associated habitat
environmental medium	feces
geographic location	France
investigation type	metagenome-assembled genome
isolation source	human gut
project name	MGP PacBio
sample name	min17_eukbin1
ENA first public	2022-01-31
ENA last update	2022-01-31
ENA-CHECKLIST	ERC000050
External Id	SAMEA12617183
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-01-31T20:30:03Z
INSDC last update	2022-01-31T20:30:03Z
INSDC status	public
Submitter Id	min17_eukbin1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaFlye 2.9-b1768
binning parameters	defaults
binning software	MetaBAT v2.12.1
completeness score	72
completeness software	BUSCO 5.2.2
contamination score	2
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	human gut metagenome
sample derived from	ERR8157883
sequencing method	PacBio Sequel II
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic run ERR8157883

Metagenome-assembled genome: min17_eukbin1
Metagenome-assembled genome: min17_eukbin1

biosample
MAG: uncultured Clostridia bacterium isolate min17_bin05, whole genome shotgun s...
MAG: uncultured Clostridia bacterium isolate min17_bin05, whole genome shotgun sequencing project
gi|2187391181|emb|CAKMVK000000000.1 VK010000000

Nucleotide
MAG: uncultured Clostridia bacterium isolate min17_bin41, whole genome shotgun s...
MAG: uncultured Clostridia bacterium isolate min17_bin41, whole genome shotgun sequencing project
gi|2187391191|emb|CAKMVX000000000.1 VX010000000

Nucleotide
MAG: uncultured Oscillospiraceae bacterium isolate min17_bin43, whole genome sho...
MAG: uncultured Oscillospiraceae bacterium isolate min17_bin43, whole genome shotgun sequencing project
gi|2187391957|emb|CAKMWL000000000.1 WL010000000

Nucleotide
Metagenome-assembled genome: min17_bin72
Metagenome-assembled genome: min17_bin72

biosample

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