ID 802524 - BioProject

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Accession: PRJEB50473 ID: 802524

PacBio HiFi sequencing of a human fecal metagenome

Characterization of the fecal metagenome from a healthy human donor with the PacBio HiFi sequencing technology.

Accession	PRJEB50473
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Plaza Oñate F et al., "Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing.", Microbiol Resour Announc, 2022 Jun 16;11(6):e0025022
Submission	Registration date: 1-Feb-2022 Institut National pour la Recherche Agronomique (FRANCE)

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	759
WGS master	78
Genomic DNA	11
SRA Experiments	1
Publications
PubMed	1
PMC	1
Other datasets
BioSample	90
Assembly	89

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

11
78
89

Assembly	WGS	Chrs	BioSample	Taxonomy
GCA_928721975.1	CAKMWM000000000		SAMEA12751974	Alistipes communis
GCA_928722145.1	CAKMWW000000000		SAMEA12751992	Alistipes finegoldii
GCA_928721485.1	CAKMUK000000000		SAMEA12751989	Alistipes inops
GCA_928721595.1	CAKMVB000000000		SAMEA12751982	Alistipes onderdonkii
GCA_928721935.1	CAKMWJ000000000		SAMEA12751968	Alistipes putredinis
GCA_928721385.1	CAKMUH000000000		SAMEA12751995	Bacteroides caccae
GCA_928722085.1	CAKMWS000000000		SAMEA12751996	Bacteroides cellulosilyticus
GCA_928721795.1	CAKMVN000000000		SAMEA12751932	Bacteroides nordii
GCA_928721705.1	CAKMVI000000000		SAMEA12751926	Bacteroides stercoris
GCA_928721955.1	CAKMWD000000000		SAMEA12751958	Bacteroides uniformis
GCA_928721965.1	CAKMWF000000000		SAMEA12752004	Bacteroides xylanisolvens
GCA_928721435.1	CAKMUP000000000		SAMEA12751949	Barnesiella intestinihominis
GCA_928721925.1	CAKMWC000000000		SAMEA12751961	Bifidobacterium longum
GCA_934883995.1	CAKXXT000000000		SAMEA12617183	Blastocystis sp. subtype 1
GCA_928721515.1	CAKMUW000000000		SAMEA12751936	Butyricimonas faecalis
GCA_928722015.1	CAKMWI000000000		SAMEA12751963	Candidatus Gastranaerophilales bacterium
GCA_928721685.1	CAKMVF000000000		SAMEA12751981	Clostridia bacterium
GCA_928721655.1	CAKMVC000000000		SAMEA12751978	Clostridia bacterium
GCA_928721455.1	CAKMUL000000000		SAMEA12751994	Coprococcus comes
GCA_928721695.1		1	SAMEA12751969	Dialister succinatiphilus
GCA_928721995.1		1	SAMEA12751975	Duodenibacillus massiliensis
GCA_928721445.1	CAKMUM000000000		SAMEA12751947	Faecalibacillus intestinalis
GCA_928722165.1	CAKMWV000000000		SAMEA12751948	Faecalibacterium prausnitzii
GCA_928721475.1	CAKMUO000000000		SAMEA12751956	Lachnospiraceae bacterium
GCA_928721715.1	CAKMVO000000000		SAMEA12751985	Lachnospiraceae bacterium
GCA_928722215.1	CAKMXB000000000		SAMEA12751957	Methanobrevibacter smithii
GCA_928722185.1	CAKMXA000000000		SAMEA12751990	Mitsuokella jalaludinii
GCA_928721545.1	CAKMUV000000000		SAMEA12751938	Odoribacter splanchnicus
GCA_928722135.1	CAKMWX000000000		SAMEA12751929	Oscillospiraceae bacterium
GCA_928721985.1	CAKMWH000000000		SAMEA12751931	Oscillospiraceae bacterium
GCA_928721495.1	CAKMUQ000000000		SAMEA12751941	Parabacteroides distasonis
GCA_928852585.1	CAKMXR000000000		SAMEA12751921	Paraprevotella clara
GCA_928721815.1	CAKMVR000000000		SAMEA12751953	Roseburia faecis
GCA_928721605.1	CAKMUY000000000		SAMEA12751979	Roseburia hominis
GCA_928721415.1	CAKMUN000000000		SAMEA12751993	Ruminococcus bicirculans (ex Wegman et al. 2014)
GCA_928721825.1	CAKMVP000000000		SAMEA12751976	Ruminococcus bromii
GCA_928722095.1	CAKMWQ000000000		SAMEA12751965	Sutterella wadsworthensis
GCA_928722065.1	CAKMWR000000000		SAMEA12751998	[Bacteroides] pectinophilus
GCA_928722025.1	CAKMWK000000000		SAMEA12751959	[Ruminococcus] lactaris
GCA_928852565.1		1	SAMEA12751922	uncultured Alistipes sp.
GCA_928721675.1	CAKMVE000000000		SAMEA12751988	uncultured Alphaproteobacteria bacterium
GCA_928722225.1		1	SAMEA12751999	uncultured Alphaproteobacteria bacterium
GCA_928721465.1		1	SAMEA12751950	uncultured Alphaproteobacteria bacterium
GCA_928721565.1		1	SAMEA12751920	uncultured Clostridia bacterium
GCA_928721525.1		1	SAMEA12751937	uncultured Clostridia bacterium
GCA_928721635.1	CAKMUZ000000000		SAMEA12751977	uncultured Clostridia bacterium
GCA_928721725.1	CAKMVG000000000		SAMEA12751970	uncultured Clostridia bacterium
GCA_928721915.1	CAKMVZ000000000		SAMEA12752006	uncultured Clostridia bacterium
GCA_928721875.1	CAKMVX000000000		SAMEA12751960	uncultured Clostridia bacterium
GCA_928721775.1	CAKMVM000000000		SAMEA12751972	uncultured Clostridia bacterium
GCA_928721855.1	CAKMVV000000000		SAMEA12751928	uncultured Clostridia bacterium
GCA_928721625.1	CAKMVA000000000		SAMEA12751987	uncultured Clostridia bacterium
GCA_928721425.1	CAKMUJ000000000		SAMEA12751945	uncultured Clostridia bacterium
GCA_928721785.1	CAKMVK000000000		SAMEA12751924	uncultured Clostridia bacterium
GCA_928721585.1	CAKMUX000000000		SAMEA12751991	uncultured Clostridium sp.
GCA_928722055.1	CAKMWN000000000		SAMEA12751966	uncultured Collinsella sp.
GCA_928721835.1	CAKMVT000000000		SAMEA12752007	uncultured Coprococcus sp.
GCA_928722195.1	CAKMWZ000000000		SAMEA12751997	uncultured Coprococcus sp.
GCA_928721735.1	CAKMVH000000000		SAMEA12751942	uncultured Coriobacteriales bacterium
GCA_928721905.1	CAKMWE000000000		SAMEA12752000	uncultured Gemmiger sp.
GCA_928852575.1	CAKMXQ000000000		SAMEA12751923	uncultured Lachnospira sp.
GCA_928721575.1	CAKMUU000000000		SAMEA12751925	uncultured Lachnospira sp.
GCA_928721555.1	CAKMUT000000000		SAMEA12751943	uncultured Lachnospira sp.
GCA_928721535.1	CAKMUR000000000		SAMEA12751935	uncultured Lachnospira sp.
GCA_928722205.1	CAKMXC000000000		SAMEA12751984	uncultured Lachnospiraceae bacterium
GCA_928722125.1	CAKMWU000000000		SAMEA12751944	uncultured Lachnospiraceae bacterium
GCA_928721745.1	CAKMVJ000000000		SAMEA12751973	uncultured Lachnospiraceae bacterium
GCA_928721645.1	CAKMVD000000000		SAMEA12751927	uncultured Lachnospiraceae bacterium
GCA_928721765.1	CAKMVQ000000000		SAMEA12751934	uncultured Lachnospiraceae bacterium
GCA_928721615.1		1	SAMEA12751983	uncultured Mollicutes bacterium
GCA_928721845.1	CAKMVU000000000		SAMEA12751986	uncultured Muribaculaceae bacterium
GCA_928721755.1	CAKMVL000000000		SAMEA12751933	uncultured Mycoplasmatota bacterium
GCA_928722075.1	CAKMWP000000000		SAMEA12752003	uncultured Mycoplasmatota bacterium
GCA_928722155.1		1	SAMEA12751954	uncultured Mycoplasmatota bacterium
GCA_928721665.1		1	SAMEA12751930	uncultured Mycoplasmatota bacterium
GCA_928722105.1		1	SAMEA12751951	uncultured Mycoplasmatota bacterium
GCA_928722045.1	CAKMWO000000000		SAMEA12752002	uncultured Oscillibacter sp.
GCA_928722035.1	CAKMWL000000000		SAMEA12751962	uncultured Oscillospiraceae bacterium
GCA_928721865.1	CAKMVY000000000		SAMEA12751980	uncultured Oscillospiraceae bacterium
GCA_928721405.1	CAKMUI000000000		SAMEA12751955	uncultured Oscillospiraceae bacterium
GCA_928722005.1	CAKMWG000000000		SAMEA12752001	uncultured Oscillospiraceae bacterium
GCA_928721805.1	CAKMVS000000000		SAMEA12751967	uncultured Oscillospiraceae bacterium
GCA_928721945.1	CAKMWB000000000		SAMEA12751964	uncultured Oscillospiraceae bacterium
GCA_928722175.1	CAKMWY000000000		SAMEA12751940	uncultured Oscillospiraceae bacterium
GCA_928722115.1	CAKMWT000000000		SAMEA12751946	uncultured Oscillospiraceae bacterium
GCA_928721885.1	CAKMVW000000000		SAMEA12752005	uncultured Oscillospiraceae bacterium
GCA_928721505.1	CAKMUS000000000		SAMEA12751952	uncultured Oscillospiraceae bacterium
GCA_928721895.1	CAKMWA000000000		SAMEA12751971	uncultured Ruminococcus sp.
GCA_928721395.1	CAKMUG000000000		SAMEA12751939	uncultured Ruminococcus sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	13
Data volume, Mbytes	8571

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PacBio HiFi sequencing of a human fecal metagenome

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