Metagenome-assembled genome: min17_bin09

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

collection date	2019
broad-scale environmental context	human-associated habitat
local-scale environmental context	human-associated habitat
environmental medium	feces
geographic location	France
investigation type	metagenome-assembled genome
isolation source	human gut
project name	MGP PacBio
sample name	min17_bin09
ENA first public	2022-01-31
ENA last update	2022-01-31
ENA-CHECKLIST	ERC000050
External Id	SAMEA12751928
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-01-31T20:30:04Z
INSDC last update	2022-01-31T20:30:04Z
INSDC status	public
Submitter Id	min17_bin09
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaFlye 2.9-b1768
binning parameters	MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module
binning software	MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3
completeness score	79.01
completeness software	checkm v1.1.3
contamination score	2.2
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	human gut metagenome
sample derived from	ERR8157883
sequencing method	PacBio Sequel II
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic run ERR8157883

Metagenome-assembled genome: min17_bin09
Metagenome-assembled genome: min17_bin09

biosample
MAG: Bacteroides nordii isolate min17_bin13, whole genome shotgun sequencing pro...
MAG: Bacteroides nordii isolate min17_bin13, whole genome shotgun sequencing project
gi|2187392753|emb|CAKMVN000000000.1 VN010000000

Nucleotide
MAG: Dialister succinatiphilus isolate min17_bin50 genome assembly, chromosome: ...
MAG: Dialister succinatiphilus isolate min17_bin50 genome assembly, chromosome: 1
gi|2187152063|emb|OV788641.1|

Nucleotide
MAG: uncultured Alphaproteobacteria bacterium isolate min17_bin31 genome assembl...
MAG: uncultured Alphaproteobacteria bacterium isolate min17_bin31 genome assembly, chromosome: 1
gi|2187163478|emb|OV788636.1|

Nucleotide

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