Metagenome-assembled genome: min17_bin49

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Result Filters

Organism: Alistipes putredinis
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes

Attributes

collection date	2019
broad-scale environmental context	human-associated habitat
local-scale environmental context	human-associated habitat
environmental medium	feces
geographic location	France
investigation type	metagenome-assembled genome
isolation source	human gut
project name	MGP PacBio
sample name	min17_bin49
ENA first public	2022-01-31
ENA last update	2022-01-31
ENA-CHECKLIST	ERC000050
External Id	SAMEA12751968
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-01-31T20:30:04Z
INSDC last update	2022-01-31T20:30:04Z
INSDC status	public
Submitter Id	min17_bin49
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaFlye 2.9-b1768
binning parameters	MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module
binning software	MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3
completeness score	99.52
completeness software	checkm v1.1.3
contamination score	0.96
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	human gut metagenome
sample derived from	ERR8157883
sequencing method	PacBio Sequel II
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic run ERR8157883

Metagenome-assembled genome: min17_bin49
Metagenome-assembled genome: min17_bin49

biosample
MAG: uncultured Lachnospira sp. isolate min17_bin24, whole genome shotgun sequen...
MAG: uncultured Lachnospira sp. isolate min17_bin24, whole genome shotgun sequencing project
gi|2187391745|emb|CAKMUT000000000.1 UT010000000

Nucleotide
Metagenome-assembled genome: min17_bin15
Metagenome-assembled genome: min17_bin15

biosample
Metagenome-assembled genome: min17_bin30
Metagenome-assembled genome: min17_bin30

biosample
MAG: uncultured Mycoplasmatota bacterium isolate min17_bin14, whole genome shotg...
MAG: uncultured Mycoplasmatota bacterium isolate min17_bin14, whole genome shotgun sequencing project
gi|2187391196|emb|CAKMVL000000000.1 VL010000000

Nucleotide

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