Metagenome-assembled genome: min17_bin84

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Result Filters

Organism: uncultured Mycoplasmatota bacterium
cellular organisms; Bacteria; Bacillati; Mycoplasmatota; environmental samples

Attributes

collection date	2019
broad-scale environmental context	human-associated habitat
local-scale environmental context	human-associated habitat
environmental medium	feces
geographic location	France
investigation type	metagenome-assembled genome
isolation source	human gut
project name	MGP PacBio
sample name	min17_bin84
ENA first public	2022-01-31
ENA last update	2022-01-31
ENA-CHECKLIST	ERC000050
External Id	SAMEA12752003
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-01-31T20:30:04Z
INSDC last update	2022-01-31T20:30:04Z
INSDC status	public
Submitter Id	min17_bin84
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaFlye 2.9-b1768
binning parameters	MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module
binning software	MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3
completeness score	81.27
completeness software	checkm v1.1.3
contamination score	1.69
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	human gut metagenome
sample derived from	ERR8157883
sequencing method	PacBio Sequel II
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic run ERR8157883

Metagenome-assembled genome: min17_bin84
Metagenome-assembled genome: min17_bin84

biosample
MAG: uncultured Ruminococcus sp. isolate min17_bin20, whole genome shotgun seque...
MAG: uncultured Ruminococcus sp. isolate min17_bin20, whole genome shotgun sequencing project
gi|2187391859|emb|CAKMUG000000000.1 UG010000000

Nucleotide
MAG: Bacteroides xylanisolvens isolate min17_bin85, whole genome shotgun sequenc...
MAG: Bacteroides xylanisolvens isolate min17_bin85, whole genome shotgun sequencing project
gi|2187392790|emb|CAKMWF000000000.1 WF010000000

Nucleotide
MAG: uncultured Oscillospiraceae bacterium isolate min17_bin27, whole genome sho...
MAG: uncultured Oscillospiraceae bacterium isolate min17_bin27, whole genome shotgun sequencing project
gi|2187391511|emb|CAKMWT000000000.1 WT010000000

Nucleotide
Metagenome-assembled genome: min17_bin31
Metagenome-assembled genome: min17_bin31

biosample

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