Metagenome-assembled genome: SRR11267074_bin.3_met... - BioSample

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Result Filters

Organism: uncultured Bifidobacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples

Attributes

collection date	2019-06-20
broad-scale environmental context	honeybee
local-scale environmental context	digestive system
environmental medium	gut content
geographic location	China
investigation type	metagenome-assembled genome
isolation source	honeybee metagenome
project name	metagenomic sequencing of Apis cerana and Apis mellifera colonies in China
sample name	SRR11267074_bin.3_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-08
ENA-LAST-UPDATE	2022-07-08
External Id	SAMEA110290075
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-08T12:18:16Z
INSDC last update	2022-07-08T12:18:16Z
INSDC status	public
Submitter Id	SRR11267074_bin.3_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	96.01
completeness software	CheckM
contamination score	0.61
geographic location (latitude)	30.15
geographic location (longitude)	120.1
metagenomic source	honeybee metagenome
sample derived from	SAMN13742503
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267074 of study SRP252002.