Metagenome-Assembled Genome: DRR247343_bin.49_Meta... - BioSample

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Metagenome-Assembled Genome: DRR247343_bin.49_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114447655; SRA: ERS16434299

Organism: Porphyromonas catoniae
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas

Attributes

broad-scale environmental context	human digestive system
collection date	not provided
environmental medium	saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	Deep shotgun metagenome sequencing (>10 Gb per sample) of bulk DNA extracted from saliva of MRONJ patients and healthy controls (initially 5 vs 5 individuals) was performed to overcome limitations of prior studies explored the association between MRONJ and microbial or viral infection. The sequence data after the preprocessing and removal of human reads are registered, including those of additional 5 patients.
sample name	DRR247343_bin.49_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	DRR247343_bin.49_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	90.87
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMD00248606
scientific_name	Porphyromonas catoniae
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas catoniae
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run DRR247343 of study DRP006591.