1UAQ


Conserved Protein Domain Family
nucleoside_deaminase

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cd01285: nucleoside_deaminase 
Click on image for an interactive view with Cn3D
Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.
Statistics
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PSSM-Id: 238612
Aligned: 84 rows
Threshold Bit Score: 72.6496
Created: 3-Feb-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleoside/Zn binding site
Evidence:
  • Structure:Saccharomyces cerevisiae 1UAQ binds cytosine and Zn++

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #                                     #              
1UAQ_A       15 MDIAYEeaalg---------ykegGVPIGGCLInnk--------------------dgsVLGRGHNMrfqk--------- 56  baker's yeast
T31527      140 GSFLTEslkkyvd----rwlgeaaRLGDGCIAVqn----------------------deLLSTGRPSsh----------- 182 Caenorhabditis e...
NP_597024   178 ITRVVEmlktr---------saisICCGACIIAgg----------------------egIVSVQEDTdd----------- 215 Encephalitozoon ...
AAH11824    177 MERAVWaarra---------aargLRAVGAVVVdpa--------------------sdrVLATGHDCsca---------- 217 human
CAD43442    173 MCVAVKaaksg---------relgMDAVGAVIVdpk--------------------teqIIAVAHDCkrg---------- 213 zebrafish
NP_593408   113 KMIFLYavpafppl---tdeqfheWNSVWPVSYrkhv------------------qrqdVFTVHELKriesiledlinaa 171 fission yeast
XP_328164   144 EDIFIRsvpvpmvaptsqiqaamwSQHFWPTLYrknnplgphpamvsrsteeitddaaiWMTLAHQVaeq---------- 213 Neurospora crassa
NP_617461    49 AWLSVVlalks---------vdsgNYGVGSILVdad---------------------gkVISMGHNLvysp--------h 90  Methanosarcina a...
ZP_00118065  18 ASAVLNqalea---------aaqgTFAVGGMIVdnq--------------------tgnVICAMHNNvlkplfgssqnft 68  Cytophaga hutchi...
NP_714510    56 LSDFLNklenlv-------trdreEIPSFTRIYhk----------------------ekLISETFNEvekk--------- 97  Leptospira inter...
Feature 1            ###                                                                        
1UAQ_A       57 gsaTLHGEISTLENCgrlegk----------------------------------------------------------- 77  baker's yeast
T31527      183 --pLGHPVMEMVGNLpkrhgdd---------------------------------------------------------- 202 Caenorhabditis e...
NP_597024   216 --vLGHSVLRAVEEVskaqvs----------------------------------------------------------- 234 Encephalitozoon ...
AAH11824    218 dnpLLHAVMVCVDLVargqgrgtydfrpfpacsfapaaap---------------------------------------- 257 human
CAD43442    214 shpLHHAVMVCIDLVacgqdggaynyekypacrfs--------------------------------------------- 248 zebrafish
NP_593408   172 gasHKHGEIGCAAAIydpttdtvlavsvdersklknpinhcvmn------------------------------------ 215 fission yeast
XP_328164   214 tqaAGHGEPMGACIVqreegnkvtlvalaadarwrcqgktgctgnpmahsvlraismvaqklvraenkrtdtfqtpilef 293 Neurospora crassa
NP_617461    91 frsDLHGEMVALNLFenehpni---------------------------------------------------------- 112 Methanosarcina a...
ZP_00118065  69 fdpTAHGERQLVYWYyanrhqln--------------------------------------------------------- 91  Cytophaga hutchi...
NP_714510    98 sdsSFHSEILCIRNAkeklkt----------------------------------------------------------- 118 Leptospira inter...
Feature 1                                              #  #                                
1UAQ_A       78 --------------------------vykdtTLYTtLSPCDMCTGAIIMYGiPRCVVGenvnf---kskgEKYLQ 123 baker's yeast
T31527      203 -------------------------ylgtgsDVFLiTEPCAMCSMALVHFRvKRVFYArnsrng-vlkedGWQLH 251 Caenorhabditis elegans
NP_597024   235 -------------------------ylctglDAFIpREPCLSCSMAFVHGRiKRVFCVkrvsg---gpfsGLKIN 281 Encephalitozoon cuniculi
AAH11824    258 ------qavragavrkldadedglpylctgyDLYVtREPCAMCAMALVHARiLRVFYGapsp----dgalGTRFR 322 human
CAD43442    249 -----------csnsvcdgketglpyictgyDLYVtREPCVMCAMALVHSRiSRVFYGasta----dgafGSRYK 308 zebrafish
NP_593408   216 --ainlvakrelsrrqnrtdgskdrylckdlTVVMtHEPCVMCSMGLLHSRiRRLIYCkkqpl---tggiESLYG 285 fission yeast
XP_328164   294 eafqdkpllddeqkvfeidhpspdgylchglEMYLtHEPCVMCSMAILHSRmGKVVFRhrmpl---tgglCAENR 365 Neurospora crassa
NP_617461   113 -------------------------ttlegyTLYTsLESCPMCLIRLISSGvNAILHVssdpr---agmvGMIDF 159 Methanosarcina acetiv...
ZP_00118065  92 ------------------------lpdpeylTIITtLDPCAMCAGTLLTAGfNVGVIAiddfaginynqtFNFDT 142 Cytophaga hutchinsonii
NP_714510   119 -------------------------ryladcMLITsLEPCLMCAGTILLSRiPKVVYLlpakq--gegisSLSIE 166 Leptospira interrogan...

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