4BOP


Conserved Protein Domain Family
OTU_OTUD1

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cd22747: OTU_OTUD1 
Click on image for an interactive view with Cn3D
OTU (ovarian tumor) domain of OTU domain-containing protein 1 and similar proteins
OTU domain-containing protein 1 (OTUD1), also called DUBA-7 in humans, is a deubiquitinating enzyme/ubiquitinyl hydrolase (EC 3.4.19.12) that specifically hydrolyzes 'Lys-63'-linked polyubiquitin to monoubiquitin; this specificity is facilitated by the C-terminal Ub-interacting motif (UIM) of OTUD1. It interacts and promotes the deubiquitination of myeloid cell leukemia 1 (MCL1), a pro-survival Bcl-2 family protein that plays important roles in cell survival, proliferation, differentiation and tumorigenesis. OTUD1 also deubiquitinates IFN regulatory factor 3 (IRF3) and attenuates its function; IRF3 is critical for the transcription of type I IFNs in defensing virus and promoting inflammatory responses. Loss-of-function mutations of OTUD1 associated with multiple autoimmune diseases including systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), ulcerative colitis (UC) and Hashimoto's thyroiditis (HT). OTUD1 belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad.
Statistics
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PSSM-Id: 438584
Aligned: 9 rows
Threshold Bit Score: 273.995
Created: 6-Jul-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:4BOP: Human OTUD1 forms a homodimer as part of the octameric functional unit; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                       ## #####         
4BOP_A         3 KLALYLAEVEKQDKYLRQRnKYRFHIIPDGNCLYRAVSKTVYGDQsLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIA 82  human
XP_006000323 257 KIARYLAEVDKQNKYLRDRqKYRFHIIPDGNCLYRAVSKAVYGDQaMHKDLREQTVHHIADHLDEFNPIIEGDIGEFLIN 336 coelacanth
XP_007887983 323 RIARYLAEVEKQNSYLREReRYRFHIIPDGNCLYRAVCKAVYGEQaVHRELREQTVHHIADHLDEFNPIIEGDVGEFLIA 402 elephant shark
Q5VV17       289 KLALYLAEVEKQDKYLRQRnKYRFHIIPDGNCLYRAVSKTVYGDQsLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIA 368 human
XP_418604    186 KLALYLAEVEKQDRYLRQKgRFRFHIIPDGNCLYRAVCKAVYGDQrPHGELREQTVHYIADHLDHFGPIIEGDVGEFLIA 265 chicken
XP_005162641 234 KVTRYLAEVEKQNKYLHDRqKYRFHIIPDGNCLYRAVSKAAYGDQsMHKELREQTMHHIADHLEEFNPIIEGDVGEFLIN 313 zebrafish
XP_018122752 126 RLALHLAEVDKQDKYLREEqRYRFYIIPDGNCLYRAVCKAMYGEQsLHAELRERTVHYVADHLDLFNLIIEGDIGEFLIN 205 African clawed ...
XP_002594056 287 RLDAILSEVKLQDKSLAKSgACRYPIAGDGNCLYRAVAHAVYGNQaLHTDLRRRTVQYMRDHRDDFAPFLDCDADSYIAK 366 Florida lancelet
XP_023357762  17 NKAKGLEEIMKQDMYLRERnKCRFHIIPDGNCLYRAVSKAVYGHQnQYQELREKTVSYIAGNLDLFRILIEGDVEEFLFK 96  Tasmanian devil
Feature 1              #  #   #             #  #  #   # #  ####             #     #     
4BOP_A        83 AAQDGAWAGYPELLAMGQMLNVNIHLTTGGRlESPTVSTMIHYLGPEDs--lRPSIWLSWLSNGHYDAVFD 151 human
XP_006000323 337 AAQDGTWAGYPELLAMSQMLNINIYLTTGGSlESPTVSTMVHYLGAEDa--mKTSIWLSWLSNGHYDAVFD 405 coelacanth
XP_007887983 403 AAQDGAWAGYPELLAMSQMLNVNVYLTTGGSmESPTVSTMVHYLGPEDp--sKRSVWLSWLSNGHYDAVFE 471 elephant shark
Q5VV17       369 AAQDGAWAGYPELLAMGQMLNVNIHLTTGGRlESPTVSTMIHYLGPEDs--lRPSIWLSWLSNGHYDAVFD 437 human
XP_418604    266 AAQDGAWAGYPELLAMGQMLNVNIHLTTGGRpESPTVSTMVHYLGPEDp--tRPSIWLSWLSNGHYDAVLD 334 chicken
XP_005162641 314 AAQDGAWAGYPELLAMSQMLNVNIYLTTGGSvESPTVSTMVHYLGEEDs--sKPAIWLSWLSNGHYDVLLD 382 zebrafish
XP_018122752 206 AAQDGAWAGYPELLAMSHMLEVNIRLTTGGRpECPTVSTMVHRIGGEDp--tRPSIWLSWLSNGHYDAVFE 274 African clawed frog
XP_002594056 367 AAKDGEWAGYTEMVALMRLLNVDVRLTTGGTpGQPDVTSGVHRVREEVdvkgNKTVWLSWLSHGHYDAVEK 437 Florida lancelet
XP_023357762  97 AAQNNTWGGYPEMLALGDILNISIQLTLGGSlENPIVSTTIHSFDPENs--hKKSIWLSWLSYGHYDTVLD 165 Tasmanian devil

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