1AN4


Conserved Protein Domain Family
bHLHzip_USF1

?
cd18924: bHLHzip_USF1 
Click on image for an interactive view with Cn3D
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in upstream stimulatory factor 1 (USF1) and similar proteins
USF1, also termed Class B basic helix-loop-helix protein 11 (bHLHb11), or major late transcription factor 1, is a bHLHzip transcription factor that binds to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3') that is found in a variety of viral and cellular promoters. It is ubiquitously expressed and involved in the transcription activation of various functional genes implicated in lipid and glucose metabolism, stress response, immune response, cell cycle control and tumour suppression. USF-1 recruits chromatin remodeling enzymes and interact with co-activators and the members of the transcription pre-initiation complex. Genetic polymorphisms of USF1 are associated with some metabolic and cardiovascular diseases, like diabetes, atherosclerosis, coronary artery calcifications and familial combined hyperlipidaemia (FCHL).
Statistics
?
PSSM-Id: 381494
Aligned: 6 rows
Threshold Bit Score: 106.695
Created: 19-Mar-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Structure:1AN4; Homo sapiens USF1 bHLHzip basic region binds DNA, contacts at 4.0 A.
  • Citation:PMID 8306960

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1               # #  #####   #               ##    ####                   
1AN4_A         1 MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMEStKSGQSKGGILSKASDYIQELRQSNHR 65  human
NP_001007486 196 RDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMENtKSGQSKGGILSKACDYIQELRQSNHR 260 chicken
NP_956590    195 RDEKRRAQHNEVERRRRDKINNWIVQLSKTIPDCTIDStKTGQSKGGILSKACDYIQELRQSNSR 259 zebrafish
Q07957       193 RDDKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMEStKTGQSKGGILSKACDYIQELRQSNLR 257 Kenyan clawed frog
P22415       196 RDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMEStKSGQSKGGILSKACDYIQELRQSNHR 260 human
NP_998359    171 RDDKRRAQHNEVERRRRDKINQWIVQLSKTIPDCTYDA-KNNQSKSGILSKACDYIQELRQSNAR 234 zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap