Conserved Protein Domain Family
RRM_RBM43

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cd12546: RRM_RBM43 
RNA recognition motif in vertebrate RNA-binding protein 43 (RBM43)
This subgroup corresponds to the RRM of RBM43, a putative RNA-binding protein containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although its biological function remains unclear, RBM43 shows high sequence homology to poly [ADP-ribose] polymerase 10 (PARP-10), which is a novel oncoprotein c-Myc-interacting protein with poly(ADP-ribose) polymerase activity.
Statistics
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PSSM-Id: 409962
Aligned: 8 rows
Threshold Bit Score: 101.731
Created: 6-Jul-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6ZSC3         15 RTVVVAGLPvdlfsdqllAVLVKSHFQDi-kNEGGDVEDVIYPtr-----tkGVAYVIFKEkkVAENVIRqkkHWLARKT 88   human
XP_002742351    5 KSIIVTGIPsg-----asRDQLQIYFQRs-sNGGGDVTSVVYPlnpqsesmkDVAMVTFDKeeDCQRVLSk-vQTLNSTL 77   Saccoglossus ...
XP_002608357  164 RSILVSNIPdg-----inKDKLEIHFMRk-sNGGGDIENITLRd-------sSTAKITYMDesSIQGVLDk-eQFIRDKK 229  Florida lancelet
XP_002127337    2 SAIRVQKLPds-----anPDKIEIHFQKr-kNNGGDVAYVLFPinq---sevDTALVEFEEddVADDVVSk-kQVFQDVV 71   Ciona intesti...
XP_002609022    9 RCVVVHGLPadvp-agtlKDKLNIHFQSrrkSGGGDVRKVELTdg------gQVAYVWFEAreTAQNVLQrqeQVFEITV 81   Florida lancelet
CAF90030        6 GTVRVSGLPadie-egrlKDKLFIHFLRt-rNGGGEIETITIAka-----tpVSALITFEEceVARSVIErspHVLEVSG 78   spotted green...
AAH96897        4 MVIEVNRLPdsyr-edamIDKLTIHFLRr-cNKGEDVLTVIYPts-----nkGQAYVVFESe-EVPGVLEh-tHVLQVES 74   zebrafish
XP_020664563   51 RTIVVCGIPdgllnddimADILMIHFQKa-kNKGGDVEDVAYPta-----tkGVAYVTFEDkrVAENVLQkgeHRLEDKR 124  central beard...
Q6ZSC3         89 RHAEL 93   human
XP_002742351   78 LEVKP 82   Saccoglossus kowalevskii
XP_002608357  230 VEVQR 234  Florida lancelet
XP_002127337   72 LVVKK 76   Ciona intestinalis
XP_002609022   82 NGEKR 86   Florida lancelet
CAF90030       79 KKYKL 83   spotted green pufferfish
AAH96897       75 QFYPL 79   zebrafish
XP_020664563  125 LYKGY 129  central bearded dragon
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