Conserved Protein Domain Family
Nucleostemin_like

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cd04178: Nucleostemin_like 
A circularly permuted subfamily of the Ras GTPases
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein.
Statistics
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PSSM-Id: 206753
Aligned: 41 rows
Threshold Bit Score: 210.895
Created: 12-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:based on structure of B. Subtilis Ylqf Gtpase

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ## ##                           ###      
CAI40396  136 DVILEVLDARDPLGCRCfqmeeav--lraqgnKKLVLVLNKIDLVPKEVV-EKWLDYLRNE--LPTVAFKASTQHQVKNl 210 human
EAA37158  144 DVIMEVIDARDPKGTRCpeiedi----caekrKPFVLVMNKVDLVPQQVA-RAWLAYFKNHa-VPCIAFKSSTHVHKGHe 217 Giardia lamblia AT...
EAY17766   97 DVLLEVLDARDPIGCRSkkledy----ilkrgKRIVLILNKADLVPLEIL-NKWLVFLRRE--FPTIPFKSSSQPNKSVe 169 Trichomonas vagina...
EAL21569  100 DVIIQVLDARDPEGTRSrwvedev-rkrdmqgKKLLGVLNKIDLVPRANL-EAWLKHLRHS--FPTMPFKSSTQSQKQHl 175 Cryptococcus neofo...
AAH75773  144 DVIVEVLDARDPLGCRCpqleeiv--lkhegkKKLLFILNKIDLVPKDNL-EKWLHYLEAE--CPTFLFKSSMQLKDRTv 218 zebrafish
CCD77942  109 DVILEVLDARDPMGTRCpeieei----vlgenKRLVLLINKIDLVPRSNL-EAWVNYLRKT--HTVITFKANTQRQSNHl 181 Schistosoma mansoni
EAN79235  153 DVLLQVVDARDPLGCRLnqlertirsqfgedkKKMVMVLNKADLLPSKETvDAWVHFFEEHegIMCIPFAATAKGASGHt 232 Trypanosoma brucei
XP_665523 104 DVVLEILDARDPLGFRNvelers----ivaqgKKLVLILSKIDLVPGDVV-KEWLTYLRRE--HPTLAFKSALNSSTEFg 176 Cryptosporidium ho...
AAV74413  142 DVVLEVLDARDPLGCRCpqveea---ivqsgqKKLVLILNKSDLVPKENL-ESWLNYLKKE--LPTVVFRASTKPKDKGk 215 human
AAH45248  135 DVIVEVLDARDPLGSRCsqaeev---vlkspnKRLLLLLNKSDLVPREMV-EKWLQVLSAE--LPTVPFRCVAQIQDKSe 208 African clawed frog
Feature 1                                                                            #######  
CAI40396  211 nrcsvpvd----------qasesllksKACFGAENLMrvLGNYCRLGEVRth-----------irVGVVGLPNVGKSSLI 269 human
EAA37158  218 vnlskfvdgetgnkhaedrlsralhdpRAIIGASELKhlLHKIDARKAAAstpeakdaamrtkivAAVVGIPNVGKSSII 297 Giardia lamblia AT...
EAY17766  170 vplhd-----------------gkykgTDVFGIKELIklLNQLAMGSSIV---------------AGVFGPPNVGKSSVI 217 Trichomonas vagina...
EAL21569  176 sqnavplaqpstv-pgkqavlqelpttSASLGAPALLhlLKQYALSTPHSsl------------tVGVVGYPNVGKSSLI 242 Cryptococcus neofo...
AAH75773  219 qqkrqqrgt---------navldhsraASCFGKDFLLqtLNDLANKKEGEtm-----------lkVGVVGFPNVGKSSII 278 zebrafish
CCD77942  182 sygkpyl-------------lkdgkmpTKGFGTSELLslLANYSRDPSSSlsntna----rlsltVGVVGLPNTGKSALI 244 Schistosoma mansoni
EAN79235  233 ---------------------------YVANMFRRLR--ALATSEETGARka-----------ivVGVIGYPNVGKSSVI 272 Trypanosoma brucei
XP_665523 177 vnhskssgl--------nashdfikasSVAFGVSPLMslIKNYSRYNKNSkks----------itIGVMGYPNVGKSSLI 238 Cryptosporidium ho...
AAV74413  216 itkrvkak-----------knaapfrsEVCFGKEGLWklLGGFQETCSKAi-------------rVGVIGFPNVGKSSII 271 human
AAH45248  209 kkkkkkvp-----------vsadlvtdPKCPGGQVLLkiLHSLCPSHNEAi-------------kVGVIGFANVGKSSVI 264 African clawed frog
Feature 1                                         # 
CAI40396  270 NSLKRsracsVGAVPGITKFMQEVYLDKFIRLLDAPGI 307 human
EAA37158  298 NSLSSrnavgVAPIPGYTKKISEIHIDLRLRILDSPGV 335 Giardia lamblia ATCC 50803
EAY17766  218 NSISRraatgVASTPGFTKVMQEVEVTARIRILDCPGV 255 Trichomonas vaginalis G3
EAL21569  243 NSLKRsracaVAAMPGKTRVVQEVALDKGVKILDCPGV 280 Cryptococcus neoformans var. neoformans B-3501A
AAH75773  279 NSMKEmracnAGVQRGLTRCMQEVHITKKVKMIDSPGI 316 zebrafish
CCD77942  245 NTLKRqkvciSGNVPGLTRQSQRVRIDKNLFLLDTPGT 282 Schistosoma mansoni
EAN79235  273 NALKRkhvvgVGNMPGFTTGNTEVELRSDIRVMDCPGV 310 Trypanosoma brucei
XP_665523 239 NSLKRgycvkVGAVAGVTRHLQRIDLDSTTKLIDSPGV 276 Cryptosporidium hominis TU502
AAV74413  272 NSLKQeqmcnVGVSMGLTRSMQVVPLDKQITIIDSPSF 309 human
AAH45248  265 NSLKQshvcnVGPSKGTTKFLQEVRLDPQIRLLDSPAL 302 African clawed frog

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