Conserved Protein Domain Family
ePHD_TCF20

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cd15699: ePHD_TCF20 
Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)
The extended plant homeodomain (ePHD) zinc finger is characterized as Cys2HisCys5HisCys2His. This model corresponds to the C-terminal ePHD/ADD (ATRX-DNMT3-DNMT3L) domain of TCF-20. TCF-20, also termed nuclear factor SPBP, or protein AR1, or stromelysin-1 PDGF (platelet-derived growth factor)-responsive element-binding protein (SPRE-binding protein), is involved in transcriptional activation of the MMP3 (matrix metalloprotease 3) promoter. It is strongly enriched on chromatin in interphase HeLa cells, and displays low nuclear mobility, and has been implicated in Smith-Magenis syndrome and Potocki-Lupski syndrome. As a chromatin-binding protein, TCF-20 plays a role in the regulation of gene expression. It also functions as a transcriptional co-regulator that enhances or represses the transcriptional activity of certain transcription factors/cofactors, such as specificity protein 1 (Sp1), E twenty-six 1 (Ets1), paired box protein 6 (Pax6), small nuclear RING-finger (SNURF)/RNF4, c-Jun, androgen receptor (AR) and estrogen receptor alpha (ERalpha). TCF-20 contains an N-terminal transactivation domain, a novel DNA-binding domain with an AT-hook motif, three nuclear localization signals (NLSs) and a C-terminal ePHD/ADD domain.
Statistics
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PSSM-Id: 277169
Aligned: 4 rows
Threshold Bit Score: 186.66
Created: 19-Mar-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 12 residue positions
Conserved feature residue pattern:C C H C C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human Borjeson-Forssman-Lehmann syndrome-associated protein PHF6 (PDB 4NN2) binds three Zn2+ ions through its ePHD finger
  • Comment:The extended PHD finger is characterized by Cys2HisCys5HisCys2His.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                                                                            
Q9UGU0       1705 CCLCGKWASYRNMGDLFGPFYpqdyaatlpknpppkratemqskvkvrhksasngsktdteeeeeqqqqqkeqrslaahp 1784 human
XP_002934760 1612 CCLCGKWANYRNLGDLFGPFYnqeyastlsknpppkkssetprkvkvrhkdtsdgsksdsdeeeeeepqqareqrsltah 1691 western clawe...
XP_004937749  805 CCLCGKWASYRNMGDLFGPFYpqdyaatlpknpppkratemqskvkvrhksasngsktdteeeeeqqqqkeqrslaahpr 884  chicken
XP_005171593 2034 CCLCQKWANYKHLGDLYGPFYpaeyaaklpknqpqvrqtlshfgpaatgmtsipteaipqdtrlqepqnvkssaesdctv 2113 zebrafish
Feature 1                                                                                         
Q9UGU0       1785 rfkr--------------------------------------------------------------------------rh 1790 human
XP_002934760 1692 p------------------------------------------------------------------------------- 1692 western clawe...
XP_004937749  885 fkrr--------------------------------------------------------------------------hr 890  chicken
XP_005171593 2114 sqatnttspatiigtvspmplempfqnaiassstarvtthawdtaaelesglgtsnlqetdaeiaskqlqvessqqrpqh 2193 zebrafish
Feature 1                                                                         #  #            
Q9UGU0       1791 rsedcgggprslsrglpckkaategssektvldskpsvpttseggpelelqipelpldsnEFWVHEGCILWANGIYLVcG 1870 human
XP_002934760 1693 -rykrrnrsgdctssrltvpshrkttdpseltpmdssgpstaeagpeqgvqipqlpldsnEFWMHEGCVLWANGVYFVcG 1771 western clawe...
XP_004937749  891 sedcsgasrslsrgasckkatteggsggektpldskpsmptseggtelelqipelpldsnEFWVHEGCILWANGIYLVcG 970  chicken
XP_005171593 2194 rkltshprfkrrhkssedlprtvpinskaslpfqppppsldalgpmaqlaqlplvpldpeELWVHESCMVWTSGIYLVnG 2273 zebrafish
Feature 1                         #  #        #    #    #  #                #  #
Q9UGU0       1871 RLYGLQEALEIAREMKCSHCQEaGATLGCYnKGCSFRYHYPCAIDADClLHEENFSVRCPKH 1932 human
XP_002934760 1772 RLYGLREAVDIAREMKCSHCQEtGATLGCYnKGCACCYHFPCAMDSEClLNEENFSVRCPKH 1833 western clawed frog
XP_004937749  971 RLYGLQEAVEIAREMKCSHCQEpGATLGCYnKGCSFRYHYPCAIDADClLNEENFSVRCPKH 1032 chicken
XP_005171593 2274 RLYGLQEALDGARDASCSHCEMaGSTLGCYsKGCTLRYHYICAIDADCsLNEDNFSLRCPKH 2335 zebrafish

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