4GPA


Conserved Protein Domain Family
PBP1_iGluR_AMPA_GluR4

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cd06388: PBP1_iGluR_AMPA_GluR4 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Statistics
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PSSM-Id: 380611
Aligned: 5 rows
Threshold Bit Score: 784.212
Created: 11-Feb-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative dimerputative
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:
  • Comment:based on sequence and structure similarity to other AMPA-glutamate receptor N-terminal domains

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                        ##      #                       
4GPA_A         7 QIGGLFIrNTDQEYTAFRLAIFLHNTSPnaseAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDkRSVHTLT 86  Norway rat
NP_001106657  28 QIGGLFIrNTDQEYTAFRLAIFLHNTSPnaseAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDkRSVHTLT 107 chicken
NP_999971     23 QIGGLFIrNTDQEYTAFRLAIFLHNTSPnateAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDkRSVHTLT 102 zebrafish
ACM69013      28 QIGGLFIrNTDQEYTAFRLAIFLHNTSPneseALFNLVPHVDNIETSNSFAVTNAFCSQYSRGVFAIFGLYDkRSVHTLT 107 African clawed ...
P48058        28 QIGGLFIrNTDQEYTAFRLAIFLHNTAPnaseAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDkRSVHTLT 107 human
Feature 1         #   #                                            #     #   #  ## ###    ## #   
4GPA_A        87 SFCSALHISLITPSFPteGESQFVLQLRPSLRGALLSLLDhyeWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVE 166 Norway rat
NP_001106657 108 SFCSALHISLITPSFPteGESQFVLQLRPSLRGALLSLLDhyeWNRFVFLYDTDRGYSILQAIMEKAGQNSWQVSAICVE 187 chicken
NP_999971    103 SFCSALHISLVTPSFPaeGETQFVLQLRPSIRGALLSLLDhydWSRFVFLYDTDRGYAVLQAIMEKAGQNGWQVSAICVE 182 zebrafish
ACM69013     108 SFCSALHISLITPSFPteGESQFVLQLRPPLRGALLSLLDhygWNHYVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVE 187 African clawed ...
P48058       108 SFCSALHISLITPSFPteGESQFVLQLRPSLRGALLSLLDhyeWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVE 187 human
Feature 1                        #                                                               
4GPA_A       167 NFNDVsYRQLLEELDRRQekKFVIDCEierLQNILEQIVSVgkHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLvdf 246 Norway rat
NP_001106657 188 NFNDAsYRRLLEDLDRRQekKFVIDCEierLQNLLEQIVSVgkHVKGYHYIVANLGFKDISLERFMHGGANVTGFQLvdf 267 chicken
NP_999971    183 NFNDAsYRRLLEDLDRRQekKFVIDLEaerLQNILEQIVSVgkHVKGYHYIVANLGFKDISLERFMHGGANVTGFQLvdf 262 zebrafish
ACM69013     188 NFNDAsYRRLLEDLDRRQenKFVIDCEverLQNILEQIVSVgkHVKGYHYIIANLGFKDISLDRFMHGGANVTGFQLvdf 267 African clawed ...
P48058       188 NFNDVsYRQLLEELDRRQekKFVIDCEierLQNILEQIVSVgkHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLvdf 267 human
Feature 1                                                                       #####            
4GPA_A       247 ntpmVTKLMDRWkkldqreypgsetppkyTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMER 326 Norway rat
NP_001106657 268 stpmVTKLMQRWkkldqreypgsetppkyTSALTYDGVLVMAETFRNLRRQKIDISRRGNAGDCLANPAAPWGQGIDMER 347 chicken
NP_999971    263 skpmVIKLMQRWnkldqreypgsesppryTSSLTYDGVLVMAEAFRNLRRQKIDISRRGNAGDCLANPAAPWNQGIDMER 342 zebrafish
ACM69013     268 ntpiVTELMQRWktldqreypgsesppkyTSALTYDGVLVMAEAFRILRRQKVDLSRRGNAGDCLANPAAPWGQGIDMER 347 African clawed ...
P48058       268 ntpmVTKLMDRWkkldqreypgsetppkyTSALTYDGVLVMAETFRSLRRQKIDISRRGKSGDCLANPAAPWGQGIDMER 347 human
Feature 1                                                             
4GPA_A       327 TLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ 379 Norway rat
NP_001106657 348 TLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKNTGPRKVGYWNDMDKLVLIQ 400 chicken
NP_999971    343 TLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDLDKLVLVQ 395 zebrafish
ACM69013     348 TLKQVRIQGLTGNIQFDHYGRRVNYTMDVLELKSNGLRKIGYWNDMDKLVLLQ 400 African clawed frog
P48058       348 TLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ 400 human

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