Conserved Protein Domain Family
7tmA_CCR9

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cd15174: 7tmA_CCR9 
CC chemokine receptor type 9, member of the class A family of seven-transmembrane G protein-coupled receptors
CCR9 is a homeostatic receptor specific for CCL25 (formerly known as thymus expressed chemokine) and is highly expressed on both immature and mature thymocytes as well as on intestinal homing T Lymphocytes and mucosal Lymphocytes. In cutaneous melanoma, activation of CCR9-CCL25 has been shown to stimulate metastasis to the small intestine. Chemokines are principal regulators for leukocyte trafficking, recruitment, and activation. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling. Currently, there are ten known receptors for CC chemokines, seven for CXC chemokines, and single receptors for the XC and CX3C chemokines. The CC chemokine receptors are all activating the G protein Gi.
Statistics
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PSSM-Id: 320302
Aligned: 6 rows
Threshold Bit Score: 434.95
Created: 11-Dec-2008
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative chemokine binding site [polypeptide binding site]
Evidence:
  • Comment:based on structures of chemokine receptors with bound ligands (chemokines, peptides, or chemical antagonists/agonists)
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                 #  #               #  ##
P51686        49 HFLPPLYWLVFIVGALGNSLVILVYWYCTRvk-tMTDMFLLNLAIADLLFLVTLPFWAIAAadqWKFQtfmCKVVNSMYK 127 chimpanzee
AAH92878      84 YYEPMLYWMIVILGAIGNTLVVWIYTHFKNrlkaMTDVYLLNLALADLFFLCTLPFWAADSiygWAFGsglCKVVSAVYK 163 zebrafish
AAI54645      59 NFEPPLYWIIFVVGALGNLLVICIFTTVRNrlktMTDVYLLNLAVADLIFLGTLPFWATNAaqgWVFHqviCKGVSAAYK 138 zebrafish
NP_001039305  39 AFLPVFFWLIFFVGTVGNALVVLIYCKYRFrr-sMMDRYLLHLAVADLLLLFTLPFWATAAssgWIFRnfmCKVVNSMYK 117 chicken
XP_002940844 113 YVLPPIYWCVFLFGLVGNSLVLAVYVYNRKlk-tMTDTFLINLAIADILFLITLPFWAIAAshdWVFKtalCKAVNSMYS 191 western clawed ...
XP_007899022  47 YFQPAFYWCVCLLGAIGNILVVVLYAFYKRik-tMTDVYLLNLSIADLLFLCTLPFWALNAsigWRFGsslCKIVSGVYK 125 elephant shark
Feature 1                                                                               ######   
P51686       128 MNFYSCVLLIMCISVDRYIAIAQamRAHTWRekrlLYSKMVCFTIWVLAAALCIPEILYsqike-esgiaICTMVYPsde 206 chimpanzee
AAH92878     164 INFFSSMFLLTCISVDRYIVIVQttKAQNSKrsrlLYSKLICVLVWLLAALMSIPECLFarskeddesntFCTMVYWnne 243 zebrafish
AAI54645     139 INFFASMLLLTCISVDRYIAIVHvtEAHNYKnkrmLHSKITCAFVWLASCILALPEFIFakvkniepqhnSCVMVYSimd 218 zebrafish
NP_001039305 118 INFYGCILFLTCISFDRYLTIVQatKAKSSKqrriLRSKVVCFAVWLASVSLCLPEIMYsqskq-igavtVCKMTYPpni 196 chicken
XP_002940844 192 VNVYSGMLLLACISIDRYIAIVQatKAQKYQtkklLISKLTCFIVWALSTGLSLPEILFsvvke-efnstTCTMSYPael 270 western clawed ...
XP_007899022 126 INLFSCMFLLTCISFDRYIAIVLatKAHYSKnkrlLQSKLVCLFVWIIATILSFPEFAFsstn---esqmTCSSNYPsk- 201 elephant shark
Feature 1            #  ##                                                      #      #  #      
P51686       207 stklKSAVLTLKVILGFFLPFVVMACCYTIIIHTLiqakkSSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAyamfi 286 chimpanzee
AAH92878     244 nnrtKILVLALQICMGFCIPLVVMIFCYTNIIRTLlktrnFQKHKALRVILAVVAVFVLSQLPYNGMLVFEATQAanmtv 323 zebrafish
AAI54645     219 nnrtKVLVLALQICVGFLVPFMVIVLCYSVIIRKLmqarsFEKHKALRVIIAVVAVFVFSQLPLNGYLIIEAGQAnnati 298 zebrafish
NP_001039305 197 gmafRVAVLVLKVTIGFFLPLLVMVICYTLIIHTLlqakrCQKHKSLKIITMIITAFLLSQFPYNIVLLIKTINMytgav 276 chicken
XP_002940844 271 sktfKVSVLSLKVTVAFCLPFLVMVFCYAMIIPILvqargFQRHKALKVIFAVLSVFILSQLPYNSILVLRVLNAanind 350 western clawed ...
XP_007899022 202 --nmKVVAFALQVTFGFLLPLVIMMICYSLITWTLlqtkrFQKHKAIKVIVAVVSTFVLTQLPYNSFLIVKLLDAdniti 279 elephant shark
Feature 1             #   #  ##  #                         
P51686       287 snCAVSTNIDICFQVTQTIAFFHSCLNPVLYVFVGeRFRRDL 328 chimpanzee
AAH92878     324 tnCTESIRFDIAGQVMKSIAYMHSCLNPFLYAFVGvRFRKDV 365 zebrafish
AAI54645     299 tdCEVMQRLDMVGQIVKSLAYTHCCLNPILYVFIGvRFQKDL 340 zebrafish
NP_001039305 277 ysCQTINGLDIGLQVTQSIAFLHSCLNPFLYVFAGeRFRMAL 318 chicken
XP_002940844 351 feCATTQNIDIAYKITQSVAFLHCCLNPFIYVFVGvKFRSDL 392 western clawed frog
XP_007899022 280 tdCNTLKNVDIATQITQSIAFLHCCLNPFLYAFIGvKFRQHL 321 elephant shark

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