Conserved Protein Domain Family
SLC5sbd_SMCT2

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cd11520: SLC5sbd_SMCT2 
Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain
SMCT2 is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2) is encoded by the SLC5A12 gene. SMCT2 is expressed in the kidney, small intestine, skeletal muscle, and retina. In the kidney, it is expressed in the apical membrane of the proximal convoluted tubule, along the entire length of the tubule (in contrast to the high-affinity monocarboxylate transporter SMCT1, belonging to a different family, which is limited to the S3 segment of the tubule). SMCT2 may initiate lactate absorption in the early parts of the tubule. In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner, SMCT2 is expressed exclusively in Muller cells. Nicotine transport by hSMCT2 is inhibited by several non-steroidal anti-inflammatory drugs. This subgroup belongs to the solute carrier 5 (SLC5) transporter family.
Statistics
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PSSM-Id: 212089
Aligned: 6 rows
Threshold Bit Score: 954.295
Created: 20-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1: putative glycosylation site [posttranslational modification site], 1 residue position
Conserved feature residue pattern:NClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_848593      3 VKNFAVWDYVVFAALFFISSGIGVFFAIKERKKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFL 82  human
XP_428889      9 IKKFVVWDYVVFAGLFLVCASIGVFFAIKERKKKTSKEFLVGGKQMSCGPIAFSLTSSFMSAVTVLGTPSEVYRYGASFV 88  chicken
NP_956662      4 VGRFQAGDYVVFACLFVVSSGIGVFFAIKERNKAPSKEFLVGGRQMSCGPVALSLTASFMSAVTVIGAPADVYRFGASYV 83  zebrafish
Q49B93         3 VKNFEAWDYVVFAGLFVISSGIGVFFAIKERKKTTSREFLVGGRQMSFGPVALSLTASFMSAVTVLGTPAEVYRFGASFF 82  house mouse
XP_003224296   9 VKNFVAWDYVVFAALFLISSGIGVFFAIKDRKKTTSGDFLVGGRQMTCGPVALSLTASFMSAVTVLGTPAEVYRHGSAFI 88  green anole
XP_003206142   9 IKKFIIWDYIVFAGLFLVCASIGVFFAIKERKKKTSKEFLVGGKQMSCGPIAFSLTSSFMSAVTVLGTPSEVYRYGASFV 88  turkey
Feature 1                                                                                        
NP_848593     83 VFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSV 162 human
XP_428889     89 LFFLSYTFVIILTSELFLPVFYRSDITSTYEYLELRFNKTVRLAATLIYILQTILYTGIVVYAPSLALNQVTGFDLWGSV 168 chicken
NP_956662     84 IFGVAYTFVVFFTAELFLPVFYRSGITSTYEYLELRFCKLVRVAATLIYIIQTILYTGVVVYAPALALNQVTGFDLWGSI 163 zebrafish
Q49B93        83 LFLISYVFVVFFTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATIIYIVQTILYTGVVVYAPALALNQVTGFNLWASV 162 house mouse
XP_003224296  89 LFSIAYTFVIIFTSELFLPVFYRSGITSTYEYLELRFNKPVRIAATLIYIVQTILYTGVVVYAPALALNQVTGFNLWGSV 168 green anole
XP_003206142  89 LFFLSYTFVIILTSELFLPVFYRSDITSTYEYLELRFNKNVRLAATVIYILQTILYTGIVVYAPSLALNQVTGFDLWGSV 168 turkey
Feature 1                                                                #                       
NP_848593    163 FATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHaGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTIT 242 human
XP_428889    169 VATGIVCTFYCTTGGLKAVVWADAFQMVIMVLGFVTVLIRGTILnGGSTRIWEDAYEGSRLNIFDFDVDPLRRHTFWTIV 248 chicken
NP_956662    164 FATGIVCTFYCTLGGLKAVVWTDAFQMVVMVVGFLTVLIQGSSRaGGIENVWSTSRTGGRLQVFDFDVSPLRRHTFWTLS 243 zebrafish
Q49B93       163 FATGIVCTFYCSLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSNHvGGFNNVLEKAGNGSRLHIVDFDVDPLRRHTFWTIT 242 house mouse
XP_003224296 169 FATGIVCTFYCTLGGLKAVVWTDAFQLVVMLIGFLTVLIQGTLEnGGLTNIWETADNGSRLNVFDFDFDPLRRHTFWTIA 248 green anole
XP_003206142 169 VATGVVCTFYCTTGGLKAVVWADAFQMVIMVLGFVTVLIRGTILnGGSTRIWEDAYEGSRLNIFDFDVDPLRRHTFWTIV 248 turkey
Feature 1                                                                                        
NP_848593    243 VGGTFTWLGIYGVNQSTIQRCISCKTekhAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSGIISAPDQLMPYF 322 human
XP_428889    249 IGGTFTWLGLYGVNQSTIQRCISCKSekhAKMALYLNLLGLWIVLVCAVFSGLVMYAHYKNCDPWTADFISAPDQLMPYF 328 chicken
NP_956662    244 VGGTFTWLGIYGVNQSTIQRCISCKTeghARWALYLNLLGLWIILFCAVVSGLIMYSYYSHCDPWSSGLISAPDQLMPYF 323 zebrafish
Q49B93       243 IGGTFTWLGVYGVNQSTIQRCISCKTekhAKLALYFNLLGLWIIVACAVFSGLIMYSHFKDCDPWTSGVISAPDQLMPYF 322 house mouse
XP_003224296 249 VGGTFTWLGIYGVNQSTIQRCIACKTevqAKLALYLNLLGLWIILVCAVLCGLVMYSHFRSCDPWTANFISAPDQLMPYF 328 green anole
XP_003206142 249 IGGTFTWLGLYGVNQSTIQRCISCKSekhAKMALYLNLLGLWIILVCAVFCGLVMYAHYKNCDPWTADFISAPDQLMPYF 328 turkey
Feature 1                                                                                        
NP_848593    323 VMEIFatMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKlsTWISKGLCLLFGVMCTSMAVAASVM 402 human
XP_428889    329 VMDIFssMPGVPGLFVACAFSGTLSTVAASINALATVTFEDLVRKCFPNLSEKtsTWTSKGLCILYGVLCTSMAGAASLM 408 chicken
NP_956662    324 VMEILgaFPGLPGLFVACAFSGTLSTVAASINALATVMYEDFVSQCFPDLSNRaaSWISKALCVAFGVACTTMAVAASYM 403 zebrafish
Q49B93       323 VMEIFatMPGLPGLFVACAFSGTLSTVAASINALATVTFEDFVKSCFPHLSDKlsTWISKGLCILFGIMCTSMAVVASLM 402 house mouse
XP_003224296 329 VMIIFsrAPGLPGLFVACAFSGTLSTVAASINALATVTSEDLVKYFFPHLSERvnTWISKGLCIVFGVVCTSMAVAASLM 408 green anole
XP_003206142 329 VMDIFssMPGVPGLFVACAFSGTLSTVAASINALATVTFEDLVRKCFPNLSEKtsTWTSKGLCILYGVLCTSMAGAASLM 408 turkey
Feature 1                                                                                        
NP_848593    403 GGVVQASLSIHGMCGGPMLGLFSLGIVFPFvNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQCIKSNVT 482 human
XP_428889    409 GGVVQAALSIHGMCGGPMLGLFTLGIIFPCvNWKGAIGGFLTGITLAFWVGIGSFIYPAQPVKTIPLELSTLNCTLANST 488 chicken
NP_956662    404 GGIVQAALSIHGMCGGPVLGLFSLGILFPFtNLKGAVGGLIVGISLSFWVGVGAFIYPAPSNNTHALELNTAGCNITAAA 483 zebrafish
Q49B93       403 GSVVQAALSIHGMCGGPMLGLFTLGLVFPFvNWKGALGGLLTGITLSFWVAIGSFIYPAPESKTLPLPLSTEHCVELNIT 482 house mouse
XP_003224296 409 GGVVQASLSIHGMCGGPMLGLFTLGIVFPCtNWKGAFGGLLTGITLAFWVGIGAFVYPAPSSKSLPLHLSTAGCITNNSE 488 green anole
XP_003206142 409 GGVVQAALSIHGMCGGPMLGLFTLGIIFPCvNWKGAIGGFLTGITLAFWVGIGSFIYPAQPVKTIPLELSTLNCTLANST 488 turkey
Feature 1                                                          
NP_848593    483 atgpp-----vlssRPGIADTWYSISYLYYSAVGCLGCIVAGVIISLITG 527 human
XP_428889    489 alsttat-pimvadRPLLADTWYSLSYLYFSTIGCLGCIISGLLISFATG 537 chicken
NP_956662    484 feptsatvtqltsdRNWLADSWYSMSYLYYSAVGFIGTVAAGLLITLLTG 533 zebrafish
Q49B93       483 ttvap-----qissRPVLADTWYSLSYLYFSAVGCLGCIAAGIIISFLTG 527 house mouse
XP_003224296 489 tvtamm--ptlppvRPHLADTWYSLSYLYYSAVGCIGCVMAGLLISFVTG 536 green anole
XP_003206142 489 alpttaa-pitaadRPLLADTWYSLSYLYFSTIGCLGCIISGLLISFVTG 537 turkey

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