3OP5,2LAV


Conserved Protein Domain Family
STKc_VRK1

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cd14122: STKc_VRK1 
Click on image for an interactive view with Cn3D
Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 1
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. VRKs were initially discovered due to its similarity to vaccinia virus B1R STK, which is important for viral replication. Vertebrates contain three VRK proteins. Human VRK1 is implicated in the regulation of many cellular processes including cell cycle progression and proliferation, stress responses, nuclear envelope assembly and chromatin condensation. It regulates cell cycle progression during the DNA replication period by inducing cyclin D1 expression. VRK1 also phosphorylates and regulates some transcription factors including p53, c-Jun, ATF2, and nuclear factor BAF. VRK1 stabilizes p53 by interfering with its mdm2-mediated degradation. Accumulation of p53, which blocks cell growth and division, is modulated by an autoregulatory loop between p53 and VRK1 (accumulated p53 downregulates VRK1). This autoregulatory loop has been found to be nonfunctional in some lung carcinomas. The VRK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 271024
Aligned: 5 rows
Threshold Bit Score: 588.779
Created: 6-Apr-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #####   #                 # #                                  
3OP5_A        26 GEIITDmaaAAWKVGLpIGQGGFGCIYLADMNSSesvgSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEqiQKWIRTRKL 105 human
2LAV_A        26 GEIITDmakKEWKVGLpIGQGGFGCIYLADMNSSesvgSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEqiQKWIRTRKL 105 human
Q7ZUS1        27 GEVLTDnakKKWKLGSaVGQGGFGLLYLANEDSSgpvtADAPYVIKVEPSDNGPLFSELKFYMRAAKPDliGAWMKSKKM 106 zebrafish
NP_001006485  25 GEVLTDtsrKEWKLGVpIGQGGFGRLYLADVNSSksvgSDAPYVVKVEPSQNGPLFTELKFYMRAAKPDeiQKWTKSHKL 104 chicken
AAH61293      26 GEVLTDsakKQWKLGLpIGQGGFGRLYLADENSSrtvgPDAPYVIKVEPSENGPLFSELKFYMRAAKPDqiQKWSTSHKL 105 western clawed ...
Feature 1             #                   ####  #                                       # # ## # 
3OP5_A       106 KYLGVPKYWGSGLHdknGKSYRFMIMDRFGsDLQKIYEANAKrFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLL 185 human
2LAV_A       106 KYLGVPKYWGSGLHdknGKSYRFMIMDRFGsDLQKIYEANAKrFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLL 185 human
Q7ZUS1       107 EYLGVPKYWGSGFHeknGKRYRFMVMDRFGtDLQKLFEGNGKkFSRKLVLQLGLRLLDILEYIHDHEYVHADIKASNLLL 186 zebrafish
NP_001006485 105 KYLGVPRYWGAGLHeksGNSYRFMIMDRFGrDLQKVYEENAKrFAHKTVLQLGLRILDILEYIHEHEYVHGDIKASNLLQ 184 chicken
AAH61293     106 KYLGVPRYWGSGLHtknGNSYRFMVMDRFGqDLQKIFENQGKiFPRKTVLQLGLRLIDILEYIHEHEYVHGDIKASNLLI 185 western clawed ...
Feature 1                   #                                                                    
3OP5_A       186 NykNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGvaPSRRGDLEILGYCMIQWLtGHLPWEDnl 265 human
2LAV_A       186 NykNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGvaPSRRGDLEILGYCMIQWLtGHLPWEDnl 265 human
Q7ZUS1       187 SytNPNQVFLVDYGLAYRYAPEGVPKEYKEDPKRCHDGTIEFTSIDAHKGvsPSRRADLEIMGYCMIQWLcSRLPWEDkl 266 zebrafish
NP_001006485 185 SykNPNQVYLVDYGLAYRYCPEGVHKAYKEDPKRCHDGTIEYTSIDAHKGvaPSRRGDLEILGYCMVHWLsGHLPWEDnl 264 chicken
AAH61293     186 HhkNPDQVFLVDYGLAYRYCPDSVHKEYKEDPRKCHNGTIEFTSIDAHKGvsPSRRGDLEILGYCMIQWLcGRLPWEDnl 265 western clawed ...
Feature 1                                                                     
3OP5_A       266 kDPKYVRDSKIRYRENIASLMDKCFPAanAPGEIAKYMETvKLLDYTEKPLYeNLRDILLQ 326 human
2LAV_A       266 kDPKYVRDSKIRYRENIASLMDKCFPEknKPGEIAKYMETvKLLDYTEKPLYeNLRDILLQ 326 human
Q7ZUS1       267 qDPLYVRDSKLRCRDNIDEFLKSCFASgnIPAEMGKFMQEvKVLGYTDRPDYdKLRGILQQ 327 zebrafish
NP_001006485 265 kDPNFVRDSKIRCRDNISELMEKCFPGknKPDEIRKYMEKvKQLGYEEKPVYpHFREILLQ 325 chicken
AAH61293     266 gDANYVTNSKIRYGDDSSELMEACFPGknKPEEIRKFMEAvKELSYTTKPPYpHLREILLQ 326 western clawed frog

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