2D8Y


Conserved Protein Domain Family
LIM_Eplin_alpha_beta

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cd09485: LIM_Eplin_alpha_beta 
Click on image for an interactive view with Cn3D
The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin): Epithelial Protein Lost in Neoplasm is a cytoskeleton-associated tumor suppressor whose expression inversely correlates with cell growth, motility, invasion and cancer mortality. Eplin interacts and stabilizes F-actin filaments and stress fibers, which correlates with its ability to suppress anchorage independent growth. In epithelial cells, Eplin is required for formation of the F-actin adhesion belt by binding to the E-cadherin-catenin complex through alpha-catenin. Eplin is expressed in two isoforms, a longer Eplin-beta and a shorter Eplin-alpha. Eplin-alpha mRNA is detected in various tissues and cell lines, but is absent or down regulated in cancer cells. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188869
Aligned: 6 rows
Threshold Bit Score: 102.265
Created: 9-Nov-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2D8Y_A: Human Eplin protein LIM domain binds Zn
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                 #  # 
2D8Y_A        18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70  human
NP_001088398 349 CFSCQKTVYPMERLFANNQVYHNSCFRCSHCSTKLSLGTFASLHGTAYCKPHF 401 African clawed frog
NP_571739    286 CVTCLKTVYPLEKLVANQQIYHNTCFRCAYCNTKLSLVNYASLHNNVYCKPHY 338 zebrafish
XP_424485    390 CVGCQKTVYPMERLLANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHF 442 chicken
XP_002663732  59 CVSCQQTVYQLERLVANQQIYHKKCFRCAVCSTKLSLAAFASLHGSIYCKPHF 111 zebrafish
CAF90059       9 CVSCQKTVYPLEKLVANQHIYHSSCFRCSHCNTKLSLVNYASLHNNVYCKPHF 61  spotted green pufferfish

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