5VMD


Conserved Protein Domain Family
UBR-box_UBR4_5_6_7

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cd19671: UBR-box_UBR4_5_6_7 
Click on image for an interactive view with Cn3D
UBR-box found in UBR4, UBR5, UBR6/FBOX11, UBR7 and similar proteins
This family includes UBR4 (EC 2.3.2.27), UBR5 (EC 2.3.2.26), UBR6/FBOX11 and UBR7 (EC 2.3.2.27). Both UBR4 (also called 600 kDa retinoblastoma protein-associated factor, or N-recognin-4, or retinoblastoma-associated factor of 600 kDa, or RBAF600, or p600, or zinc finger UBR1-type protein 1) and UBR7 (also called N-recognin-7) are RING-type E3 ubiquitin ligases of the Arg/N-end rule degradation pathway. They recognize and bind to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. UBR5 (also called E3 ubiquitin-protein ligase, HECT domain-containing 1, E3 ligase identified by differential display (EDD), hyperplastic discs protein homolog (HYD), progestin-induced protein, or N-recognin-5) is a HECT (homologous to E6-AP C-terminus)-type E3 ubiquitin-protein ligase that acts as a key regulator of the ubiquitin proteasome system in both cancer and developmental biology. It is required for Wnt signal responses in Drosophila and human cell lines downstream of activated Armadillo/beta-catenin. It also plays a key role in ciliogenesis by regulating centriolar satellite stability and primary cilia. UBR6 (also called FBOX11, protein arginine N-methyltransferase 9 (PRMT9), or vitiligo-associated protein 1 (VIT-1)), is an E3 ubiquitin ligase and a type II methyltransferase, which functions as a key regulator of tumor initiation and progression. UBR6 is a substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DTL/CDT2, BCL6 and PRDM1/BLIMP1. UBR6 does not bind N-terminal signals.
Statistics
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PSSM-Id: 439069
Aligned: 64 rows
Threshold Bit Score: 54.7736
Created: 24-Sep-2018
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:5VMD: Homo sapiens UBR6 binds several Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             #  #         #  #   ##  #            # #        #    
5VMD_A          8 CLYKIssyt--sypmHDFYRCHTCntt-drNAICVNCIKkCHQGHDVEFIRh-dRFFCDCGagtlsnpCTLAG 76   human
XP_001009900 1708 CTLEKyqgr---heqQIFYKCHTCniaeqsYVICSWCANvCHNGHDVMYYRq-sSGTCDCVekgpqggCKVKL 1776 Tetrahymena thermoph...
EJK70612      613 CTLQFtgfshspnteQEMFICKTCsid-fgRFLCSACARtCHRGHDVVYIGt-gRGFCDCVvq---gqCKLIG 680  Thalassiosira oceanica
XP_009039410 1207 CPAQRadge--vferRVAFSCGTCspg-qgDVFCEHCAAtCHAGHDVVYKGk-mKMFCDCPtlcaghrCCPRG 1275 Aureococcus anophage...
OHT02767     1060 CENDNie-------nHVAFCCHTCqt--qdRYICTSCAMkCHKGHKISYVKk-cQYRCHCHen---gqCFFDK 1119 Tritrichomonas foetus
RHY33896      908 CTKHLtdgs---aiiQELYMCQTCns---nLVFCVPCASiCHQGHELVWMGk-vNGACGCHtrg-petCQCYA 972  Aphanomyces invadans
OHT05794     1758 CSFTKsgen---pirMHAFECISCgll-neNSICVKCAFkCHKSHELFDAGfrsNTFCHCG-------CHSQL 1819 Tritrichomonas foetus
XP_001315442  725 CHFSSnn-------kWPAFICYTCpe---nPIICLECATkCHKNHDLVCIGynnNAVCHCDk-----yCTLTN 782  Trichomonas vaginali...
EJK59290      619 CSLLRtgfcqsketeQEMFACMTCgit-fgRFVCLTCSSrCHEGHDVQIAGf-gPGYCDCCll---ssCKCMG 686  Thalassiosira oceanica
OHT15633      922 CKKSTlp------niDTSFQCFTCgvc-gdYDICGWCVMnCHKGHDIIEFGskyECTCDCGfrg-secCDCHP 986  Tritrichomonas foetus

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