3NR9


Conserved Protein Domain Family
PKc_CLK2

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cd14215: PKc_CLK2 
Click on image for an interactive view with Cn3D
Catalytic domain of the Dual-specificity protein kinase, CDC-like kinase 2
Dual-specificity PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine as well as tyrosine residues on protein substrates. CLK2 plays a role in hepatic insulin signaling and glucose metabolism. It is induced by the insulin/Akt pathway as part of the hepatic refeeding reponse, and it directly phosphorylates the SR domain of PGC-1alpha, which results in decreased gluconeogenic gene expression and glucose output. CLKs are involved in the phosphorylation and regulation of serine/arginine-rich (SR) proteins, which play a crucial role in pre-mRNA splicing by directing splice site selection. SR proteins are phosphorylated first by SR protein kinases (SRPKs) at the N-terminus, which leads to its assembly into nuclear speckles where splicing factors are stored. CLKs phosphorylate the C-terminal part of SR proteins, causing the nuclear speckles to dissolve and splicing factors to be recruited at sites of active transcription. Based on a conserved "EHLAMMERILG" signature motif which may be crucial for substrate specificity, CLKs are also referred to as LAMMER kinases. CLKs autophosphorylate at tyrosine residues and phosphorylate their substrates exclusively on serine/threonine residues. The CLK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine PKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 271117
Aligned: 4 rows
Threshold Bit Score: 666.72
Created: 24-Dec-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3NR9; Human CLK2 binds inhibitor NR9; contacts at 4A
  • Comment:also based on the structures of other CMGC kinases bound with ATP or ATP analogs
  • Citation:PMID 9739089

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ####    #             # #                                 #  
3NR9_A        22 HLIYHVGDWLQeRYEIVSTLGEGTFGRVVQCVDHRRGgARVALKIIKNVEKYKEAARLEINVLEKINEKDPDnKNLCVQM 101 human
CAK04998     175 HLICRSGDVLQeRYEIVSTLGEGTFGRVMQCIDHRRGgAHVALKIIKNVEKYKEAARLEINVLERINEKDPEnNNLCVQM 254 zebrafish
AAH43963     142 HLIYHSGDWLQeRYEIVSTLGEGTFGRVVQCKDHRRGgSRVALKIIKNVEKYKEAARLEINVLEKINEKDPEnKHLCVQM 221 African clawed ...
NP_001026497 152 HLIYRVGDWLQeRYEILSTLGEGTFGRVVQCMDHRRGgVRVALKIIKNVEKYKEAARLEINVLEKINEKDPEnKNLCVRM 231 chicken
Feature 1                     ####  #  #                                         ## #            
3NR9_A       102 FDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 181 human
CAK04998     255 FDWFDYHGHMCISFELLALSTFDFLKENNYLPYSINQVRHMAYQVCLAVKFLHENKLTHTDLKPENILFVNSDYTVTYNV 334 zebrafish
AAH43963     222 FDWFDYHGHMCISFELLGLSTFDFLKENNYFPYPIHQVRHMALQLCQAMKFLHDNKLTHTDLKPENILFVSSDYELRYNM 301 African clawed ...
NP_001026497 232 FDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQVCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 311 chicken
Feature 1                        ##                                                              
3NR9_A       182 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVgFTLFQTHdNREH 261 human
CAK04998     335 EKKRDERTVKNTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGSILFEYYLgFTLFQTHdNREH 414 zebrafish
AAH43963     302 EKKRDERCVKSTDIRVVDFGSATFDHEHHSTIVSTRHYRAPEVLLELGWNQPCDVWSVGCIIFEYYVgFTLFQTHdNREH 381 African clawed ...
NP_001026497 312 EKKRDERSVKSTAIRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVgFTLFQTHdNREH 391 chicken
Feature 1                                                                                        
3NR9_A       262 LAMMERILGPiPSRMIRKTRKQKYFYRGRLDWDENTSAgrYVRENCKPLRRYLTSEAEEHHQLFDLIESMLEYEPAKRLT 341 human
CAK04998     415 LAMMERILGPvPSRMIRKTRKQKYFYRGRLDWDENSSAgrYVRENCKPLRRYLLSEAEEHHQLFDLIEAMLEYEPSKRLT 494 zebrafish
AAH43963     382 LAMMERILGPiPSRMIRKTRKQKYFYHGRLDWDDNTSAgrYVRENCKPLRRYMMMETEEHHQFFNLIEGLLGYEPSKRMT 461 African clawed ...
NP_001026497 392 LAMMERILGPiPSRMIRKTRKQKYFYHGRLDWDENTSAgrYVRDNCKPLRRYLTSEAEDHHRLFDLIESMLEYEPSKRIS 471 chicken
Feature 1                  
3NR9_A       342 LGEALQHPFF 351 human
CAK04998     495 LAAALRHPFF 504 zebrafish
AAH43963     462 LAAALKHPFF 471 African clawed frog
NP_001026497 472 LAEALKHPFF 481 chicken

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