Conserved Protein Domain Family
PTB_CCM2

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cd13166: PTB_CCM2 
Cerebral cavernous malformation 2 FERM domain C-lobe
CCM2 (also called malcavernin; C7orf22/chromosome 7 open reading frame 22; OSM) along with CCM1 and CCM3 constitutes a set of proteins which when mutated are responsible for cerebral cavernous malformations, an autosomal dominant neurovascular disease characterized by cerebral hemorrhages and vascular malformations in the central nervous system. CCM2 plays many functional roles. CCM2 functions as a scaffold involved in small GTPase Rac-dependent p38 mitogen-activated protein kinase (MAPK) activation when the cell is under hyperosmotic stress. It associates with CCM1 in the signalling cascades that regulate vascular integrity and participates in HEG1 (the transmembrane receptor heart of glass 1) mediated endothelial cell junctions. CCM proteins also inhibit the activation of small GTPase RhoA and its downstream effector Rho kinase (ROCK) to limit vascular permeability. CCM2 mediates TrkA-dependent cell death via its N-terminal PTB domain in pediatric neuroblastic tumours. CCM2 possesses an N-terminal PTB domain and a C-terminal Karet domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 269987
Aligned: 11 rows
Threshold Bit Score: 273.606
Created: 15-Aug-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:The TSLC1 peptide binds to the alpha1C helix and the beta5C strand
  • Comment:binds to peptides in a similar mechanism to PTB domains
  • Comment:DCC P3 forms a single alpha-helix and binds to the alphabeta-groove formed by beta5 and alpha1 of the MyoX FERM F3 lobe

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q6DRP4        44 TFSLSLPDHRIDPDILLNDYIEKEVKYLGQLTSVPGYL--------NPSSRTEVLQLIDNARKshql-agqLTSEQDAVV 114 zebrafish
BAA81908      57 SVPLAGPHYRVEPDVLVSSFVEKEAKYLGTVMSIPCDF--------DPSKRAALLKIIDEQRAlklm-pqtLTYKDDVIV 127 Halocynthia ror...
XP_002588669  52 AVALEPPEYLIDPELLIEDYIEKEVKYLGAIPNVPQGL--------DLTNRTEVLRIVDDGKRrgll-pwtLHLEHDAIM 122 Florida lancelet
XP_002736688  53 SYEVIGPDYKVDAQVLIDSYIEKEVKYLGQVPNIPGGL--------DPTKRTEILRVLDAGKRhgdlpwtvHDPSYDAIL 124 Saccoglossus ko...
XP_002122911  57 SVPVVGKNYKVDPEVLAKQYVEKEIKYMGTISDVRHDF--------DPNNRTLLLSLLDEKRKvgql-pwdLSWKNDVIL 127 Ciona intestinalis
NP_001184073  43 HTVVVSLPDRVEPDILLNDYIEKEVKYLGQLTSVPGYL--------NPSSRTEILHLIDNAKRahql-pgqLTQEHDAVI 113 chicken
BAG53562      64 HTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYL--------NPSSRTEILHFIDNAKRahql-pghLTQEHDAVL 134 human
XP_697096     41 TVPLYPPDYLIHPERLIYDYVEKEVKFLGHLTWVSCSL--------NPSSRDELLQLLDTARKlrvl-plkTSVEQDCIL 111 zebrafish
NP_542192     41 SMPLYPPDYLIDPQILLCDYLEKEVKFLGHLTWVTSSL--------NPSSRDELLQLLDTARQlkel-plkTTAEQDSIL 111 human
XP_003642516  41 SVPLYPPDYLIDPQILLHDYVEKEVKFLGHLTWVTASL--------NPSSRDEVLQLLDTARKlkel-plqTTPEQDSIL 111 chicken
XP_002941370  45 TVSVSQADHRVEPDVLLNDYIEKEVKVGWGGEVVSFSFflkpfpppPPPPRSSVLCVLYLQRLhql--paqLSPEQDALI 122 western clawed ...
Feature 1         #      ####                                                                    
Q6DRP4       115 SLSAYNVKLVWRDGEDIILRVPIHDIAAVSYIRDDSLHLVVLKTAQepggspchstemsks------------------- 175 zebrafish
BAA81908     128 SFSVHNINLCERDGEKLIHRMQTHKIAAVGYARDDSYHLVFIKFASdld------------------------------- 176 Halocynthia ror...
XP_002588669 123 SLSANHVKLLRRDGEDLLHRVPVHDIAAVCYVRDDGLNLLALKIGSega------------------------------- 171 Florida lancelet
XP_002736688 125 SISAYYVKILKRDGEDLILRVPIHEIASLSYVQDDLQHLISCKIASddr------------------------------- 173 Saccoglossus ko...
XP_002122911 128 SFSAHNIKILWRDGERLIHRIPTHQLSAAGYVKDDSHVFQFFKFASevn------------------------------- 176 Ciona intestinalis
NP_001184073 114 SLSAYNIKLVWRDGEDLILRVPIHDIASVSYIRDDSAHLVVLKTAQdpgispsqslsaessk------------------ 175 chicken
BAG53562     135 SLSAYNVKLAWRDGEDIILRVPIHDIAAVSYVRDDAAHLVVLKTAQdpgispsqslcaessr------------------ 196 human
XP_697096    112 SLSARCLLLTWRDNEKLLLRIPTHEIAAASYLRDDALHLLVLKTDYtstkvdiqktvkkclnvdtvlagdslenrptgle 191 zebrafish
NP_542192    112 SLSARCLLLTWRDNEELILRIPTHEIAAASYLQDDALHLLVLKTGLgvdpvpagvdaspggagrdpgppggapekrrvgt 191 human
XP_003642516 112 SLSARCLLLTWRDDEELILRIPTHEIAAASYLRDDALHLLILKTGLgvdpvpagahpeaapvpelppaekrsgsswpepg 191 chicken
XP_002941370 123 SLSAYNVKVVWRDGEDIILRVPIHDIAAVSYIRDDCLHLVVLKTAQepgispsqslsaesak------------------ 184 western clawed ...
Feature 1                                                                                        
Q6DRP4           --------------------------------------------------------------------------------     zebrafish
BAA81908         --------------------------------------------------------------------------------     Halocynthia ror...
XP_002588669     --------------------------------------------------------------------------------     Florida lancelet
XP_002736688     --------------------------------------------------------------------------------     Saccoglossus ko...
XP_002122911     --------------------------------------------------------------------------------     Ciona intestinalis
NP_001184073     --------------------------------------------------------------------------------     chicken
BAG53562         --------------------------------------------------------------------------------     human
XP_697096    192 srrqtisntdprpaggtmerrhticgvdwklstrhepkqgsvgggagpggvaggdggslerkrvsgswesrqtrkpcggs 271 zebrafish
NP_542192    192 aerrhticsldwrmgwgggaaearaggggggslerqr------------------------------------------- 228 human
XP_003642516 192 rlggamerrhticsldwraarggqegrqggsler---------------------------------------------- 225 chicken
XP_002941370     --------------------------------------------------------------------------------     western clawed ...
Feature 1                                                                                        
Q6DRP4       176 ----------------------------------------------------------------------------ptls 179 zebrafish
BAA81908         --------------------------------------------------------------------------------     Halocynthia ror...
XP_002588669     --------------------------------------------------------------------------------     Florida lancelet
XP_002736688     --------------------------------------------------------------------------------     Saccoglossus ko...
XP_002122911     --------------------------------------------------------------------------------     Ciona intestinalis
NP_001184073 176 ---------------------------------------------------------------------------altsg 180 chicken
BAG53562     197 ---------------------------------------------------------------------------glsag 201 human
XP_697096    272 wekrpvsgswdrrpvggswerrggvgvvggswekrhgpggkpggswerkhtpggswerrqactgswergksygswerrnh 351 zebrafish
NP_542192    229 --------------------agarasgswerrqtfsgswerrhggggggggagkpggswerrqagsggggswerrhpgpn 288 human
XP_003642516 226 -----------------------rrggswerrqrgrpsgswerrqpcggswerrrigaaggswergtgfgswerrhpggn 282 chicken
XP_002941370 185 ---------------------------------------------------------------------------gitsg 189 western clawed ...
Feature 1                                                                 
Q6DRP4       180 slsesgavlveVCCLLVLAVdnkaAAEELCLLLSQVFQIVYTEStidFLDRAIFDGA 236 zebrafish
BAA81908     177 ---------sgMCNLVVLSCetknAAEELCSLAQQIFQLVYTAStidFLDKSIMDGA 224 Halocynthia roretzi
XP_002588669 172 --------dseVCNIVVLHAesraASEELCSLIGQTFQLVYTEStmaFLDRSILQGA 220 Florida lancelet
XP_002736688 174 ---------idNFKLVVLLCsskaAAEEICSLLRQTFELVYTELtmsFFDMSIQRGA 221 Saccoglossus kowalevskii
XP_002122911 177 ---------heMCNLVVLSCdnkeFATEICSLTQQLFQLVYTDStmdFFDRSIQDGA 224 Ciona intestinalis
NP_001184073 181 slsesgvvpveACCLVVLATenkvTAEELCSLLSQVFQIVYTEStidFLDRAIFDGA 237 chicken
BAG53562     202 slsesavgpveACCLVILAAeskvAAEELCCLLGQVFQVVYTEStidFLDRAIFDGA 258 human
XP_697096    352 nplepmpcpdaYCNLIILAVenrdAAEEYCALICQMFQIIYGHQtieCVDRAGFHYT 408 zebrafish
NP_542192    289 pldpqdpspdaYCNLVILAVanrdAAEESCALICQVFQIIYGDQsieCVDRAGYHYT 345 human
XP_003642516 283 pldpqepcpdaYSNLVILAVpnrdAAEESCALICQVFQIIYGDQsieCVDRAGYHYT 339 chicken
XP_002941370 190 slsecgtvpvdACCLVILATenkaAAEELCLLLSQVFQIVYTEStidFLDRAIFDGA 246 western clawed frog

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