Conserved Protein Domain Family
Arl6

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cd04157: Arl6 
Arf-like 6 (Arl6) GTPase
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Statistics
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PSSM-Id: 206722
Aligned: 8 rows
Threshold Bit Score: 256.587
Created: 1-Sep-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on alignment to Arl2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #######                ##                       #                        
AAH24239   19 HVLCLGLDNSGKTTIINKLKPSnaQSQNILPTIGFSIEKFKSs--sLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 96  human
NP_497993  19 NIVVVGLDNSGKTTILNQLKTPetRSQQIVPTVGHVVTNFSTq--nLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDS 96  nematode
AAF57559   19 TILVLGLNNSGKSSIINHFKKSseQTSIVVPTVGFMVEQFYIgmsgVSIKAIDMSGATRYRNLWEHQFKNCHGIIYVIDS 98  fruit fly
CAJ04045    9 NIIICGLDNSGKTTIINFMKPEnqRSENIAATVGYNVDSFKKg--nVYITAFDMSGAQKFRGLWESYYSNIDGVVFVIDS 86  Leishmania major
EAN86095    9 HIITCGLDNSGKSSIINRLKPTalQSEHISATVGYNVEVFEKg--sAKFTVFDMGGAKKFRGLWETYYENINGIIFVVDS 86  Trypanosoma cruzi
CAI39325   11 QVLVVGLDNSGKTSIINALKNE--KNATVAPTVGFNKDSVEKf--nLNFQFSDMSGQNQYRGMWEQYATKIDGLIFVIDS 86  Paramecium tetraur...
AAH80072   19 HVLCLGLDNSGKTTIINKLKPAnaQTHDIVPTIGFSIEKFKTs--sLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 96  African clawed frog
AAH86734   19 NVLCLGLDNSGKTTIINQLKPSnaQAQDIVPTIGFSIEKFKTs--sLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 96  zebrafish
Feature 1                                             ## #                              ###   
AAH24239   97 SDRLRMVVAKEELDTLLNHPDIk-------hRRIPILFFANKMDLRDAVTSVKVSQLLCLEni-kDKPWHICASDAIKGE 168 human
NP_497993  97 SDRLRMELLKDELMMVMEHKDVv-------sRGIPIVILANKMDIPGAMTASDITVALGLNly-rSGTWSIHSTCALTGD 168 nematode
AAF57559   99 SDRMRFVVVKDELDLVLQHPDLc-------nRIVPILFYGNKMDMEDSLSSVKIAAALRLEni-kDKPWHICSSSAISGE 170 fruit fly
CAJ04045   87 SDALRLCVVKDELEQMLNHADLk-------aCTVPFVFFANKMDLAGAKTPMELTQILQLNslmgDHPMNIFTSNALRGE 159 Leishmania major
EAN86095   87 SDELRLCVVKEEIELMLQHPDIarelpktngAKIPFLFYANKMDLPNAKTAAELVDLLDLTtlmaDRPFNIFASNALKGT 166 Trypanosoma cruzi
CAI39325   87 SDKIRFGIALDEFKLLLETPGFs--------KDLPILVYANKQDSPDAQNPQFFIDYLELKq--yKNPSQCFAGSAKTGV 156 Paramecium tetraur...
AAH80072   97 SDKLRMVVAKEELETLLNHTDIk-------hRRMPVLFFANKMDLRDSLSSVKVSQLLSLEni-kDKPWHICASDGLTGE 168 African clawed frog
AAH86734   97 GDKLRMVVAKEELDTLLNHPDIk-------hRRIPLLFFANKMDLRDALSAVKVSQLLCLEni-kDKPWHICASDAVKGE 168 zebrafish
Feature 1                 
AAH24239  169 GLQEGVDWLQDQ 180 human
NP_497993 169 GLDKAMQQLSAE 180 nematode
AAF57559  171 GLGEGVQWLIQQ 182 fruit fly
CAJ04045  160 GIHEGMDWLRSM 171 Leishmania major
EAN86095  167 GVNEGFFWLQNT 178 Trypanosoma cruzi
CAI39325  157 GLDQGLEWLSAK 168 Paramecium tetraurelia
AAH80072  169 GLQEGVDWLQEQ 180 African clawed frog
AAH86734  169 GLLEGVDWLQDQ 180 zebrafish

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