3KHK,7BST,2Y7C,3LKD,2OKC,5YBB


Conserved Protein Domain Family
HsdM

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COG0286: HsdM 
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]
Statistics
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PSSM-Id: 440055
Aligned: 664 rows
Threshold Bit Score: 94.8687
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3KHK_A       203 DILGHVYEYFLG-QFalAEGKQGGQYYTPKSIVTLIVEMLEPY----K-------G-------------------RVYDP 251
AKV03831      94 GALDAVFESLVP-R---IAKGDKGQFFTPRHVVDFVVRALEPR----A-------Ge------------------LVVDP 140
WP_012266711 287 DVVGSVYEAFLT-GT---LRGDLGQYLTPRQLVEFMVEIADIK----I-------Ge------------------KVLDL 333
AKM82913     146 DILNEAFGHFVRdNFr--NHKEDAQYMTPVEVVNTAIEIAFKDikndKssydnllSenp-------------dsfIVLDP 210
WP_035669487 312 DVLGRAFDVFLR-ANf-eSKGGLGIYLTPAPVKQAMLAMAFHD----I-------KrstedaaklvahdkgrpafRFCDP 378
WP_126039474 313 DLNGRMFETFLN-STl-rGK-ALGQYFTPRSVVKLATGlaqlra-------------------------ddkhidRVIDA 364
WP_013193662 338 LVIDEAFEYLVN-K---SAKGEKGQYFTPRHVIDMCVKMLNPK----R-------Ge------------------YMIDP 384
WP_111369820 301 DVVDEAFEYLIN-K---SSKGEKGQYFTPRYAIDMCVKMLNPQ----E-------He------------------TMIDT 347
WP_014777436 291 DSKGRAFETFMT-G---FFRGEFGQYFSPRKIVQFIVDALPIT----N-------Es------------------VVLDT 337
WP_011838001 264 DVLGRVFDVLLR-GKf-eNKGGMGIYLTPRQVTEAAAEMVLHD----L-------TkdgaakliakdpktgiptlRIGDL 330
3KHK_A       252 AMGSGGFFVSSDKFIEK-HANvkhyn----------aseqKKQI-------SVYGQESNPTTWKL--AAMNMVIRGIdfN 311
AKV03831     141 ACGSGAFLAHARARar----------------------------------vSTFGSDIDPRAVRV--ARLSALAQGRs-A 183
WP_012266711 334 SCGSGGFLIRAFINVRK-KIrflds-----------sqdeKDHLvsnlvtnNLWGIEINPRLATL--CRINMILHGDg-Y 398
AKM82913     211 TSGVSSFLIYSYKKLVE-VIEssnik---------nkgkiIS-Lrk---nnGFIGQDKVDRMVRM--SKINYLLSGL--N 272
WP_035669487 379 ACGSGGFLSVALNQLRR-TLDelsgrrta---teddrrklFAEMce----hSFVGADSSPQMVML--ARVNMALLGAp-K 447
WP_126039474 365 CSGTGGFLIEALADMWS-KLDanaslsn------krreelRMQVae----rSLIGVDVARDPALAriARINMYLHGDg-G 432
WP_013193662 385 AAGSCGFPVHTIFHLtghlfen------------teisdeDQEDi-----lKVFGIDFDEKTVRV--ARTLNLIAGDg-E 444
WP_111369820 348 ASGSCGFPVHTIFKVWR-DILkdegkeeshlfttekkggrYEDYvv----nNIFAIDFDEKAVRV--SRTLNLIAGDg-Q 419
WP_014777436 338 SCGSGGFLLHALDKVRK-QADdyhdpdt------rehwqyWHDFae----cNLFGIEISEGIART--AKMNMIIHDDg-H 403
WP_011838001 331 CCGSGGFLIKMLQKIEHyLLNkltgdk-------kqyeelFEQMke----hCFIGADNAPGMVLK--ARINMALHGAp-K 396
3KHK_A       312 FG-KKNA-----DSFLd------------Dqh-------------------pdLRADFVMTNPPFNMKdwWH-Ek----L 349
AKV03831     184 ES-VVRA-----DGLRsgs-------------------------------mrsGKADVVATNPPFAGRa-DA-------- 217
WP_012266711 399 EH-IYTG-----DSIRedvf------entDgrrtdfl---------nieqnnaAMFDVILINPPFNIPy-ED-Sa----T 451
AKM82913     273 PElVQQGnsilgDSFidq---------------------------------yvGKVDLILTNPPFGAEf-NI-De---iI 314
WP_035669487 448 AR-IFYT-----QNSltsp------------------------------qlepGSFDLICTNPPFGTPkfSKgQdtakkA 491
WP_126039474 433 TS-VYQL-----DSLDkkvsphptdepeivqekaefrkrlkeastasggseplGLADVALTNPPFAKEytRDeEgdaklL 506
WP_013193662 445 TN-VLHL-----NSLDyerwne-yvnnhnWsqtygsgynrleklresrnsnkdFDFDVLMANPPFAGDi-K--------- 507
WP_111369820 420 SN-VLHL-----NTLDwerwddkvkededWqdvyfegwkkl-kklrrgtdnreFNFDVLMANPPFAGDi-K--------- 482
WP_014777436 404 TN-VIAF-----DGLEsi---------ekMpaktnk-----------rrgfqrDGFDFIITNPPFGSKi-K--------F 448
WP_011838001 397 CP-IFQT-----RNSlmnt------------------------------rlkpGTFDAILTNPPFSKTgiSKtIkkgktT 440
3KHK_A       350 AD-D-------PRWtintn--------------------------gekriLTP--PT-GN-----ANFAWMLHMLYHLAP 387
AKV03831     218 -----------DGFavaev------------------------------------vrtpE-----RDVLFLERSLDLLRP 245
WP_012266711 452 LN-Ryy---lgRGK-----------------------------------------AA-QG-----SDYLVLERAIRLLKP 480
AKM82913     315 SEsD--------KYef-----------------------------------lSeiKEySNvktlySELIMLDRCLKLLKP 351
WP_035669487 492 HE-Eamq-ailATYrsdleprtgrgggydysptvtglamggspnskgvwkEAS--TN-TD-----PAVLFLDRCLQLLKP 561
WP_126039474 507 DD-Ymlsydt----------------------------------sggakrPLK--S--LS-----SMIMFLERYFDLLGP 542
WP_013193662 508 -E-S-------RIIhkyelg-------------------------fknngKAY--SK-IG-----RDILFIERNLDFLKS 545
WP_111369820 483 -E-S-------RILakyelg-------------------------kkpngKYQ--TK-VG-----RDILFIERNLDFLKP 520
WP_014777436 449 AE-K-------RYLenyrlgkkgvdwi-----------dakinnvnllreiTR--DQ-QT-----TEVLFIEQCHRFLKP 501
WP_011838001 441 VE-NpegaeiiKYYssdidedgqnrmspy------glslgskpdsrgkwkEVN--S--VD-----PAVLFIDRNLQLLKP 504
3KHK_A       388 -TGSMALLLANGSMS--SntNNEGE-IRKTLV------------EQDLVECMVALPgQLFt--NTQ--IPACIWFLTKDK 447
AKV03831     246 -GGRLGIVLPYNKAAgaS----FGG-LRRWLA------------ERARLFAVVGLPrETFl-pHTA--QRTFVLFAKKRR 304
WP_012266711 481 eTGRLLVILPHGVASgvS----ETE-VRNFVK------------SRTHIHGCISLPvGSFk-pFGGsnARTCVLYLKKTt 542
AKM82913     352 -GGRLLIVVPDGIVS--S--KGMNEvYRDLLS------------TRFILRGVIDLPaVTFaqaGTR--TKCSILYIQKpy 412
WP_035669487 562 -GGRLLIVLPDGVLC--N--SGERY-VREYIMgvkdeatgefhgGKAIVKAVLSLPsDAFklsGTG--AKTSVLYLQKRH 633
WP_126039474 543 -RGRLVTVVDDSILG--A--PRHKK-VREWIR------------KNWIIRAVVSLPgDAFqrsQAR--VKTSLIVLEKKS 602
WP_013193662 546 -GGRMAIVLPQGRLNnsS----DER-IREFIS------------EHARILAVVSLDqNTFk-pHAG--TKTSILFVQKWD 604
WP_111369820 521 -GGRMAVVLPQGRFNnsS----DKN-IRDYIA------------EHCRILGVVGLHgNVFk-pHTG--TKTSVLLVQKWD 579
WP_014777436 502 -GGYLAMVIPDSILTnsS----MQY-VRDWIE------------EHWRIVAVVSLPqFAFaanGAG--VKSSVLFLKKYA 561
WP_011838001 505 -GGLLMIVVPDGILS--N--SGDKY-VREYIMgkknpvtgefegGKAILKAVISLPqVTFalsGAG--AKTSLLYLKKke 576
3KHK_A       448 nakng----krdrRGQ---------------------------------------------------------------- 459
AKV03831     305 kg----------eRADps-------------------------------------------------------------- 312
WP_012266711 543 g-----------dNKK---------------------------------------------------------------- 547
AKM82913     413 e---------qkfQQNg--------------------------------------------------------------- 420
WP_035669487 634 arkdnpekfqdepQTD---------------------------------------------------------------- 649
WP_126039474 603 sed--------eiQPN---------------------------------------------------------------- 610
WP_013193662 605 ne----------lCPVved------------------------------------------------------------- 613
WP_111369820 580 dk----------lCPKvdd------------------------------------------------------------- 588
WP_014777436 562 aa----------tTAAiqsiktkaqddlfaqdalgvalealieekkstikrgeaiiqtienelvarldaltaqgtltaai 631
WP_011838001 577 hp--------gekQGP---------------------------------------------------------------- 584
3KHK_A       460 -----------------------------------------------------------VLfIDARK 467
AKV03831     313 ---------------------------------------------------------erTMfVVSEK 322
WP_012266711 548 -----------------------------------------------------------RFlAQAEH 555
AKM82913     421 -----------------------------------------------------------IFmATASD 428
WP_035669487 650 -----------------------------------------------------------VFmAVAET 657
WP_126039474 611 -----------------------------------------------------------VFmYYCSW 618
WP_013193662 614 ---------------------------------------------------------ypIFfAVSEK 623
WP_111369820 589 ---------------------------------------------------------ypIFfATMQE 598
WP_014777436 632 krelkaeakaasvahketdaykdwlqatsddfnerienlretleddflakvksqlddypIFmAIAED 698
WP_011838001 585 -----------------------------------------------------------VFmAVADE 592
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