Conserved Protein Domain Family
HSPH1_NBD

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cd11739: HSPH1_NBD (this model, PSSM-Id:212689 is obsolete and has been replaced by 466845)
Nucleotide-binding domain of HSPH1
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.
Statistics
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PSSM-Id: 212689
Aligned: 6 rows
Threshold Bit Score: 762.185
Created: 6-Apr-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of yeast NEF Sse1p-NBD with bound MgATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ####                                                       #             
EAX08480       2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSNFKRFHGRAFNDPFIQ 81  human
NP_001153170   2 AVVGFDLGFQSCYIAVARAGGIETVANEFSDRCTPSVVSFGSKNRAIGVSAKNQQITHAHNTVSNFKRFHGRAFNDPFVQ 81  chicken
NP_001086692   2 SVVGFDLGFQNCHVAIARAGGIETVANEFSDRCTPAVVSFGLKNRTIGIAAKNQLITNANNTVSSFKKFHGRAFNDAFVQ 81  African clawed ...
XP_001919957   2 AVVGFDVGFQNCCIAVVKSGGIETVSNEFTDRCTPSVISFGSKNRAIGNAAKNQMITNPSSTVFHFKRLHSRLYHDKVVQ 81  zebrafish
BAA34779       2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSNFKRFHGRAFNDPFIQ 81  human
BAA34780       2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSNFKRFHGRAFNDPFIQ 81  human
Feature 1                                                                                        
EAX08480      82 KEKEnlsYDLVPLKNGGVGIKVMYMGEEHLFSVEQITAMLLTKLKETAENSLKkpVTDCVISVPSFFTDAERRSVLDAAQ 161 human
NP_001153170  82 KEKEklsYDLVPMKNGGVGVKVMYMDEEHIFSVEQISAMLLTKLKETAESNLKkpVTDCVISVPSFFTDAERRSVLDAAQ 161 chicken
NP_001086692  82 KEKNnlpYTLVQTNNGGVGVKVNYLEEEHVFSIAQITAMLLTKLKETAENNLKkpVTDCVISVPSFFTDAERRSVLDAAQ 161 African clawed ...
XP_001919957  82 AEKAnlpYDLVPLNDGKVGVQVMYLDQEHHFSIEQISAMLLTKLKDIAEANLQkkVLECVISIPSFFTDSERRSVLDAAK 161 zebrafish
BAA34779      82 KEKEnlsYDLVPLKNGGVGIKVMYMGEEHLFSVEQITAMLLTKLKETAENSLKkpVTDCVISVPSFFTDAERRSVLDAAQ 161 human
BAA34780      82 KEKEnlsYDLVPLKNGGVGIKVMYMGEEHLFSVEQITAMLLTKLKETAENSLKkpVTDCVISVPSFFTDAERRSVLDAAQ 161 human
Feature 1                                                # ####                         #        
EAX08480     162 IVGLNCLRLMNDMTAVALNYGIYKQDLPslDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241 human
NP_001153170 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPapEEKPRIVVFVDMGHSAFQVSACAFNKSKLKVLGTAFDPFLGGRNFDGKLV 241 chicken
NP_001086692 162 IVGLNCLKLMNDMTAVALNYGIYKQDLPapEEKPKIVVFADMGHSSFQLSACAFNKGKLKVLGTAFDPYLGGRRFDEKLV 241 African clawed ...
XP_001919957 162 IAGLNCLKLMNDSTAVALNYGIYKEDLPgsDENPKIVAFVDLGHSAFQVSICAFNRGKVKVLSTAFDPYLGGKDFDQRLV 241 zebrafish
BAA34779     162 IVGLNCLRLMNDMTAVALNYGIYKQDLPslDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241 human
BAA34780     162 IVGLNCLRLMNDMTAVALNYGIYKQDLPslDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241 human
Feature 1                                     #  ##  #                                           
EAX08480     242 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321 human
NP_001153170 242 DYFCAEIKAKYKLDPKSKVRALLRLYQECEKLKKLMSSNSTDIPLNIECFMNDTDVSGKMNRSQFEELCADLLQRIEMPL 321 chicken
NP_001086692 242 EHFCVEFKTKYKLDVKSKIRAVLRLHQECEKLKKLMSSNSTDLPLNIECFMNDLDVSGRMNRVEFEGLCSDLLQRIEGPL 321 African clawed ...
XP_001919957 242 DHFCAEFKSKYMMDVKSKTRALLRLTQECEKLKKLMSSNSTELSLNIECFIDDKDVCGRMNRAKFEEMCADLIERVKFTL 321 zebrafish
BAA34779     242 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321 human
BAA34780     242 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321 human
Feature 1                            ### ##                                     
EAX08480     322 YSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILS 384 human
NP_001153170 322 LSLMEQTQLKVEDVTAVEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAIARGCALQCAILS 384 chicken
NP_001086692 322 HSLMEQTQLRAEDISAVEVIGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384 African clawed frog
XP_001919957 322 MKAVEQAGVRLQDISAVEIVGGATRIPAVKAQISSFFRRDVSTTLNADEAVARGCALQCAMLS 384 zebrafish
BAA34779     322 YSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILS 384 human
BAA34780     322 YSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILS 384 human

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