Conserved Protein Domain Family
Smf

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COG0758: Smf (this model, PSSM-Id:223829 is obsolete and has been replaced by 440521)
Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake [Replication, recombination and repair]
Statistics
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PSSM-Id: 223829
Aligned: 46 rows
Threshold Bit Score: 184.434
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15803944  45 TSDFSRAAA-SKYKPLSNSEWGKFALWLKHQRISPAELLVPQPQEKLT--GWSDPRISQEril-glLARGHSLALAVDKW 120 Escherichia coli O1...
3914980    1 ---------mMKLLYIDNLKFLKGKEKLKLFNNFDFNNVIKLTQKDIEsyFLKSFRRLFK------LPDLKLVELQEKVI 65  Lyme disease spiroc...
19703906   1 MYSKEELLIfSFINSNYDISIQNLTYKIFNFSNKESINFFKLNRIEKIefLKSFFSENNMekilniFDRINLYKIEIEKI 80  Fusobacterium nucle...
19704403   1 ----------------------------------------------------------------------------MGEI 4   Fusobacterium nucle...
15829018   1 ------------------MNEVLLYFSFINKGNTKKIFESLKKHEQID---------------------PVELKKYKSML 41  Mycoplasma pulmonis
15926832   1 ---MIKLFL-LKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWvnREENVLLLRKy----yAFIKLDHNDIIKEL 72  Staphylococcus aure...
15901126   7 ITNYEI----YKLKKSG-LTNQQILKVLEYGENVDQE--LLLGDIADI--SGCRNPAVFMe----rYFQIDDAHLSKEFQ 73  Streptococcus pneum...
15675139   1 MNHFEL----YKLKKAG-LTNKNILNILDYQKHQEKS--LSLRDMAVV--SGCKHPSHFIe----aYKQLDIQNLKMEFK 67  Streptococcus pyoge...
15606434   4 LRKLEDLVLyVRLADTNGVGLKSVKKILYHFKSIRNLNEKELERLLGT--KRAERVVLS-------LETERNFEEKLINI 74  Aquifex aeolicus
16800381   1 MNFKERETW-LKIASCKSISAKKRAVIWQKITTFNCWE-MSIEQIATH--FFTADKKE--------QIITELEEAAIYSP 68  Listeria innocua
15803944 121 QRAG----LWILTRGDADYPVRLKNRLRtdAPPVLFGCGNKALLQA--EGMAIVGSRDAPTDDLRYTQQLAAKLAQQGIC 194 Escherichia coli O1...
3914980   66 QRTK----AKVAILGSKSYPNKLKRIYD--PPFAIYYKGNLPDCSL--LSWAVVGSRKISKTLAERTREFSSHLAKNGVE 137 Lyme disease spiroc...
19703906  81 IKNCeeknIKIFYYSYENYPKNLIGIKE--SPYVIFVKGNLPSNEEleKSFAIVGTRKPSKEGIDFARDIGQYLSQNSIY 158 Fusobacterium nucle...
19704403   5 MNYN------FITINDDIYPECLKEISN--PPLKLYYKGNLDLLKEe-RLISVVGTRNPSSYGKLCCEYMVKKMTGANIT 75  Fusobacterium nucle...
15829018  42 EENS----IKYITILSSKYPEEFKYLNN--PPFILFYKGNLDLLKN---TKIALSGDVVSQKNLDLLDDFVENMKN--ET 110 Mycoplasma pulmonis
15926832  73 QKLK----VSYITYMDSEYPVLLKEIYQ--FPLLLFYKGNIKLINNm-HHLAVVGARDSTSYTQQSLEFLLSNDKSKYLT 145 Staphylococcus aure...
15901126  74 KFPS------FSIL-DDCYPWDLSEIYD--APVLLFYKGNLDLLKF--PKVAVVGSRACSKQGAKSVEKVIQGLEN-ELV 141 Streptococcus pneum...
15675139  68 QFPS------ISIL-DKHYPMALKEIYN--PPVLLFFQGNLDLLEK--PKLAIVGSRRSSDTGVKSVRKILKELGN-RFV 135 Streptococcus pyoge...
15606434  75 IDKNd---IKFILYEDKEYPEILKGIDE--PPPYLFYQG--EPPEG---GYGIVGTRRPSKLSLNAVEKLLESIEG---P 141 Aquifex aeolicus
16800381  69 EEAS------VVCILDENYPELLKEIYE--APPLLFYKGNLDLLKK--QAIAIVGTRRMSEYGRKACASLAAELSNHGFA 138 Listeria innocua
15803944 195 VISGGARGIDECAMASALEAGGTAVGVLADSLLKTS--TLVKWREGLIAGNlVLISPFYPEVRFTVGNAMARNKYIYCLA 272 Escherichia coli O1...
3914980  138 IISGFAIGADIEAHIAAINENKRTFAVIPTDIDNIYprQNRKYVSKLLEQGgGIITETLPFDKIQNYFFAKRNRLVSGLS 217 Lyme disease spiroc...
19703906 159 NISGLALGIDTEGHNMSLQKT--GAILGQGLDLAIYprENIKLAEKILENKgFLLSELIPQTEVSLFSLIKRDRLQSALT 236 Fusobacterium nucle...
19704403  76 IVSGFAKGIDSIAHKTSLLTEGKTIAVIASGLDIVYpaSNLSLYREIEEKG-LILSEYEAGVKPFKSNFPQRNRIIAGLS 154 Fusobacterium nucle...
15829018 111 LVTLNFPGFDDEVVKKFIQKDLKVIFLAANGLDNPYfsQKEFDFEKNLLIS-----IYPPEVGVKKERLQSRSEILASLA 185 Mycoplasma pulmonis
15926832 146 IVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTHYpkSTLALRNKIEEKG-LVISEYPPHTPIAKYRFPERNRIISGLS 224 Staphylococcus aure...
15901126 142 IVSGLAKGIDTAAHMAALQNGGKTIAVIGTGLDVFYpkANKRLQDYIGNDH-LVLSEYGPGEQPLKFHFPARNRIIAGLC 220 Streptococcus pneum...
15675139 136 IVSGLARGIDTSAHLACLKNGGQTIAIIGTGLDRFYpkENRELQTFLGKNH-LVLTEYGPGEEALSYHFPERNRIIAGLS 214 Streptococcus pyoge...
15606434 142 IISGGAVGIDFKAHFESLKHG--FKNFVILGTGILKieSRIKKLKGMGAS---LVSEFLPWTEGSKWTFPKRNRIIAGLS 216 Aquifex aeolicus
16800381 139 IVSGLALGIDAEAHKASLRNSGATIAVLGSGVNKIYprTNELLAKEVITQG-LLLSEYLPNEEARRWYFPERNRIISGLA 217 Listeria innocua
15803944 273 ESAMVVRAGMTGGTITGAMEALKHQWLPVQVKPNQDMQ--SANSRLVENG-ASWSAEQaENVTIRLPDVPGLMYdralrn 349 Escherichia coli O1...
3914980  218 DAIFITYAPLKSGALITAELGLDLGLDVYVYDLDFCG---DGAVKLHDFG-AQEIKTV-KDLYALLNIKYVDS------- 285 Lyme disease spiroc...
19703906 237 SGIVIAETGIKGGTVNTFKYAREQKKKIFISDINKEFIekYRKDLIVIKN-SLDFEKKlKNNLEQKNLF----------- 304 Fusobacterium nucle...
19704403 155 KGTIVVESKDRGGSLITADLALEFNRDVYAVPGDVFSEysKGCNNLIRDS-RAKSLSNiNELLKDYSWEIEEKNds---- 229 Fusobacterium nucle...
15829018 186 KYLVFFEFKKNSKSLHLVNFFLEMGKMIYCYPTDNFNe--FGNNDLIKEG-AKLITHY----S-DLA------------- 244 Mycoplasma pulmonis
15926832 225 KGVLITEAKEQSGSHITIDFALEQNRNVYVLPGSMFNPmtKGNLLRIQEG-AKVVLNA-NDIFEDYYI------------ 290 Staphylococcus aure...
15901126 221 RGVIVAEAKMRSGSLITCERAMEEGRDVFAIPGSILDGlsDGCHHLIQEG-AKLVTSG-QDVLAEFEF------------ 286 Streptococcus pneum...
15675139 215 RGILVVEAKNRSGSLITCQIGIEEGRDIFAVPGNILDGksEGCLQLIKEG-ATCVTSG-MDILSEY-------------- 278 Streptococcus pyoge...
15606434 217 KKLFVMEAGSKSGALITADYAHRYGREIYAYVGDEHSErwKGCLKLIEEGkAKRLDFSsEK-DKLLEFLSVPRt------ 289 Aquifex aeolicus
16800381 218 LGTVIIEAAERSGSLITADFALEQNRQVFAVPGNIYIDtwRGTNRLIQEG-AKLVLNA-NNIIEEFFQIKP--------- 286 Listeria innocua
15803944 350 aqpelfslheddanyavmpAYTpvdfyqlFVAELAILAKESISIERLASCTGLTIEQISVWLNRAEEEGRVIRLGEGHYQ 429 Escherichia coli O1...
3914980  286 ----------------------------------NNIEDDSKECCNCKNVSDVLIGELLKEVCK---------------- 315 Lyme disease spiroc...
19703906     --------------------------------------------------------------------------------     Fusobacterium nucle...
19704403 230 ------------------nKYTk------nQMLILNSLSSEKNLDNILIETKIEQTEILAELMTLEIMGVIKSIAGGRYK 285 Fusobacterium nucle...
15829018     --------------------------------------------------------------------------------     Mycoplasma pulmonis
15926832     --------------------------------------------------------------------------------     Staphylococcus aure...
15901126     --------------------------------------------------------------------------------     Streptococcus pneum...
15675139     --------------------------------------------------------------------------------     Streptococcus pyoge...
15606434 290 -----------------------------FDEVISFLKRERKEVFKILSSLIIQGKVVQEGAYYKKL------------- 327 Aquifex aeolicus
16800381     --------------------------------------------------------------------------------     Listeria innocua
15803944 430 FR 431 Escherichia coli O157:H7 EDL933
3914980      --     Lyme disease spirochete
19703906     --     Fusobacterium nucleatum subsp. nucleatum ATCC 25586
19704403 286 KI 287 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
15829018     --     Mycoplasma pulmonis
15926832     --     Staphylococcus aureus subsp. aureus N315
15901126     --     Streptococcus pneumoniae TIGR4
15675139     --     Streptococcus pyogenes M1 GAS
15606434     --     Aquifex aeolicus
16800381     --     Listeria innocua
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