3AG0,1V5H,1UT0


Conserved Protein Domain Family
Cygb

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cd08924: Cygb 
Click on image for an interactive view with Cn3D
Cytoglobin and related globins
Cygb is a hexacoordinated heme-containing protein, able to bind O2, NO and carbon monoxide. It has both nitric oxide dioxygenase and lipid peroxidase activities, and potentially participates in the maintenance of normal phenotype by implementing a homeostatic effect, to counteract stress conditions imposed on a cell. Cygb is implicated in multiple human pathologies: it is up-regulated in fibrosis and neurodegenerative disorders, and down-regulated in multiple cancer types, and may have a tumor suppressor role. It is expressed ubiquitously across a broad range of vertebrate organs including liver, heart, brain, lung, retina, and gut. In the human brain, it was detected at high levels in the habenula, hypothalamus, thalamus, hippocampus and pontine tegmental nuclei, detected at a low level in the cerebral cortex, and undetected in the cerebellar cortex.
Statistics
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PSSM-Id: 271275
Aligned: 8 rows
Threshold Bit Score: 287.508
Created: 14-Jun-2010
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1UT0: Human cytoglobin binds heme; contacts at 4A
  • Structure:3AG0: Human cytoglobin binds CO/heme; contacts at 4A
  • Citation:PMID 8411160

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #      #  ##                #  ##  ##  ##         
3AG0_A        21 LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDplEMERSPQLRKHACRVMGALNTVVENLHD 100 human
1V5H_A        22 LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDplEMERSPQLRKHACRVMGALNTVVENLHD 101 human
1UT0_A        19 LSEAERKAVQAMWARLYANSEDVGVAILVRFFVNFPSAKQYFSQFKHMEDplEMERSPQLRKHASRVMGALNTVVENLHD 98  human
Q8UUR3        16 LTEEDVCVIQDTWKPVYAERDNAGVAVLVRFFTNFPSAKQYFEHFRELQDpaEMQQNAQLKEHGQRVLNALNTLVENLRD 95  zebrafish
NP_001087751  19 ITESERGVIKETWARVYANCEDVGVSILIRFFVNFPSAKQHFSQFKHMEDplEMEGSVQLRKHGRRVMGAVNSVVENLGD 98  African clawed ...
NP_001008789  19 ISDAEKKVIQETWSRVYANCEDVGVSILIRFFVNFPSAKQYFSQFKHMDDtlEMERSLQLRKHAQRVMGAINTVVENLDD 98  chicken
Q575S8        19 LTDVERGIIKDTWARVYASCEDVGVTILIRFFVNFPSAKQYFSQFQDMEDpeEMEKSSQLRKHARRVMNAINTVVENLHD 98  zebrafish
Q575T0        17 LTDKERVMIQDSWAKVYQNCDDAGVAILVRLFVNFPSSKQYFSQFKHIEDaeELEKSSQLRKHARRVMNAINTLVESLDN 96  Japanese medaka
Feature 1                  #  ##  ## #   ##  #                                             
3AG0_A       101 PDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDF-PPETQRAWAKLRGLIYSHVTAAYKEVGW 173 human
1V5H_A       102 PDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDF-PPETQRAWAKLRGLIYSHVTAAYKEVGW 174 human
1UT0_A        99 PDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDF-PPETQRAWAKLRGLIYSHVTAAYKEVGW 171 human
Q8UUR3        96 ADKLNTIFNQMGKSHALRHKVDPVYFKILAGVILEVLVEAFPQCFsPAEVQSSWSKLMGILYWQMNRVYAEVGW 169 zebrafish
NP_001087751  99 PEKVTTVLSIVGKSHALKHKVEPVYFKILTGVMLEVFAEEYAKDF-TPDVQLVWNKLRSLIYSHVQSAYKEVGW 171 African clawed frog
NP_001008789  99 PEKVSSVLALVGKAHALKHKVEPVYFKKLTGVMLEVIAEAYGNDF-TPEAHGAWTKMRTLIYTHVTAAYKEAGW 171 chicken
Q575S8        99 PEKVSSVLVLVGKAHAFKYKVEPIYFKILSGVILEILAEEFGECF-TPEVQTSWSKLMAALYWHITGAYTEVGW 171 zebrafish
Q575T0        97 SDKVSSVLNAVGKAHAIRHKVDPVYFKILSGVILEVLGEAYPQVM-TAEVASAWTNLLAILCCSIKAVYEELGW 169 Japanese medaka

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