Conserved Protein Domain Family
RhoGAP_ARHGAP20

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cd04402: RhoGAP_ARHGAP20 
RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
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PSSM-Id: 239867
Aligned: 14 rows
Threshold Bit Score: 219.863
Created: 12-Apr-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative GTPasecatalytic
Feature 1:putative GTPase interaction site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            #                                      #  
XP_974029  377 LFGVALsrlct-nnalPPAITACLRALFqRGPHTQGIFRRCASAralRELREKVDTQgaavcdeisntpALLLAALLKDF 455  red flour beetle
NP_493035  253 IFGKGLngp-----tpPQPIMTIVDHLRmDGFDAEGIFRKSPKQstfKELKCELDKGvvpdf---hkynTHVLASILKEY 324  nematode
XP_227116  564 ELGNCSpnilk-dvnvPAVILDMLSVIAeKGQCSDDIFRMQSEKs-yWSLKEKVNTGkhvnl---keesVLTVASVVMDF 638  Norway rat
AAU14872    85 LFGQPLskicpedgmlPKPITEILVLLWkKGPSTEGVFRTTCNNktlKAIREQLNSGtevem---dalpVVLLVGLLKSF 161  rainbow trout
AAH81595    84 LFGRNLqdd----talPKPIAEILLLLFrKGPVTEGVFRVSCNSknlHTLRNQLNSGaevdm---dalpVTLLVGLLKIF 156  zebrafish
CAG01527   218 LFGQPLfkicpdehslPKPVTEMLVLLRkKGPSTEGVFRKPCNRknmRELREQLDNGlevdl---eaqpAVLLVGLIKSF 294  Tetraodon nigrov...
XP_417154  535 LFGLLLtaice-ddnlPKPLLDMLSLLYqEGPSTEGIFRRSGSAktcKELKEKLDSGaevdl---acesIFVTASLFKDF 610  chicken
BAE21445    66 LFGNDLsvvcd-dgnlPKAILDMLSILNeKGAITEGIFRISGNMsacHALKERLDYGkkvnl---kkecVLAVASVLKEF 141  house mouse
CAG08249   338 LFGRPLssicspdhglPKAVMDMLVHLYlEGPYTRGVFRRSAGAkacRELREQLDRGtedpe--ithqsVFVIAAVLKDF 415  Tetraodon nigrov...
AAH63236    64 LFGRALseicqkdgspPEPIMDILILLQrKGLHTEGVFRRAGNTkavKEIKAQLNDGievdl---kehpVIWLADLIKDF 140  zebrafish
Feature 1       #                                                                     #  ##    
XP_974029  456 LRSLPEPLLT-GNAQEWLTAas-----sgRTDHLRRLLSlLPRENHLLLANVVCVLYNIAKrarfNLMSAANLGVCVGPS 529  red flour beetle
NP_493035  325 LRSIPGKILLsGNYELWMREiadepntekKVSCCRALLShLPTSHSILLANVLKLLNKISNsp-sSKMNASSLSVCLAPS 403  nematode
XP_227116  639 IQNIKGSLLScDLYENWLSVpdeg-pllgKIAAIQNILLkMPNPNYVLLKQLICVLQKIKAas-tNHLDTFDLSVRIAPH 716  Norway rat
AAU14872   162 LNELPGRLLVsELFETWMKAlese-dvhqRGLQLKRVVDkLPGPNILLLRNLLCVFHHITMsghaNMMDANNLAVCIAPT 240  rainbow trout
AAH81595   157 LRELPGGLLMsEHYESWIGAleke-rteeVQSELRGMAEkLPKANSLLLQHLLCLFHHISQrsetNKMDAKNLAVCIAPT 235  zebrafish
CAG01527   295 LKELPGSLLIsDLYDDWMAAldsk-dhqqRVLEVVKVADkLPGPNKALLKHLICVFHHILEsaetNKMDARNLAVCVAPT 373  Tetraodon nigrov...
XP_417154  611 LRNIPGSILTsQLCDKWVSVmdqg-nneeKIKSIQRLIEqLPRANVVLLRYIFGVLHGIEMrseeNQMNAFNLAICIAPS 689  chicken
BAE21445   142 LHNIQGSVLTsRLYDIWLDVldqe-neeeKLAAVQSLLQrLPYPNVSLLRELFRILHNIERnsavNKMTAYSLSVCMAPC 220  house mouse
CAG08249   416 LRSIPGSLLCvDLYDQWMDAmetd-ageeKMLSIQRLLHlLPAENLLLLRHVIAVLHCIQGnaqdNQMNAFNLSVCIAPS 494  Tetraodon nigrov...
AAH63236   141 LRHLPGGLLMsEKYKDWMDAmeke-dedqKCAEIKMLINtLPVPNIQLLKHLIVLLFLISEkadtNKMVSTNLATCVSPN 219  zebrafish
Feature 1                          #                   
XP_974029  530 LLwesv------qnaPLRTLPTLVEMLINNCq-ILFGSQV 562  red flour beetle
NP_493035  404 FLespd------pmeGGKKIPPLIEFLISHAaqVMPGFST 437  nematode
XP_227116  717 VLwnptck--tlfgrDLSKKLSIIQFMIDNCq-ELFGEND 753  Norway rat
AAU14872   241 LLrkddm---tldvqTVDKVVELTKFLIEYCs-EIFGKDI 276  rainbow trout
AAH81595   236 LLhrdsq---pldvdVVEKVTKLIQFLTENCc-EIFGHDI 271  zebrafish
CAG01527   374 LLhlngtp-ldeqreKIEKVTELTQFLLEHF--EILGENI 410  Tetraodon nigroviridis
XP_417154  690 LLwppassspdveseFTKKISSLVQFLTENCc-KIFGEEI 728  chicken
BAE21445   221 ILclprsc-nsglanDISNEISLVKFLIENSl-EIFGEST 258  house mouse
CAG08249   495 MLwsqapstpemegeGTKKVCELVRLLIDNCc-SALGDDV 533  Tetraodon nigroviridis
AAH63236   220 LLqtds------nieKMEEVTKLTAFLIDNCs-RIFGDDA 252  zebrafish

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