3DHA,3JXP,4B87,1JT1,1P9E,1QH3,1X8G,1X8I,1ZTC,2AZ4,2BIB,2CFU,2FK6,2I7T,2M5D,2OHH,2P4Z,2WYM,2XF4,2YNT,2ZO4,2ZWR,3ADR,3ESH,3MD7,3P2U,4AD9,4CHL,4D02,4OJX,4YSK,4YSL,3T3N


Conserved Protein Domain Family
metallo-hydrolase-like_MBL-fold

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cd06262: metallo-hydrolase-like_MBL-fold 
Click on image for an interactive view with Cn3D
mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.
Statistics
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PSSM-Id: 293792
Aligned: 771 rows
Threshold Bit Score: 36.4949
Created: 8-Jan-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2OHH: Methanothermobacter thermautotrophicus coenzyme F420h2 oxidase (Fpra), a diiron flavoprotein, binds riboflavin monophosphate and ferrous ions
  • Structure:4D02: Escherichia coli flavorubredoxin binds one O, two ferrous irons, and a phosphate
  • Structure:1QH3: human hydroxyacylglutathione hydrolase binds a glutathione thiolester substrate analog and two zinc ions
  • Structure:4YSL: Pseudomonas putida PDO binds glutathione and one ferrous iron
  • Structure:2M5D: Bacillus cereus BcII (subclass B1) binds the broad spectrum inhibitor R-thiomandelic acid and two zinc ions
  • Structure:1X8I: Aeromonas hydrophila CphA (subclass B2) binds the antibiotic Biapenem and a zinc ion in the Asp-Cys-His site
  • Comment:binding of a second zinc ion in the modified 3H site (Asn-His-His) inhibits catalysis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                                   
3DHA_A                   11 YFIPagrcmldhssvnsaltpgkllnlpVWCYLLEte--egPILVDTGMpesavnneglfngtfv------egqilpkmt 82  Baci...
4B87_A                   16 ESSNvgg------------------srkKTCPFYKkip-gtGFTVDAFQ------------------------------- 45  human
2AZ4_A                   10 TFHSgil------------------tigGTVIEVAyk--daHIFFDFGTefrpeldlpdd----------------hiet 53  Ente...
2OHH_A                   13 YWTGvldwdlrny------hgytlqgttYNAYLVCgd--egVALIDNSYpgtfd-------------------------- 58  Meth...
2P4Z_A                   15 VQVLienvvfa----------rnfvaehGLSLLLKkg--nkEIVVDTGQsen---------------------------- 54  Cald...
2WYM_F                   41 WWLG------------------------CTGIWLKseg-gtNVCVDFWCgtgkqshgnplmkqghqmqrmagvkklqpnl 95 
P28607                   33 ITLGtmagpi------------pnakhsQPANAMLvn--gnTYVVDAGDgt----------------------------- 69  Pseu...
AAR26319                 12 IAVSgsri-----------------ggnTACVEVTsq--ghRLILDAGTgira--------------------------- 45  Myxo...
PRJNA285312:ABT55_17050  73 GHASwlv------------------qieGKSFLVDpvfgelALGPGGRNvp----------------------------- 105 Ente...
EDM71848                  4 TFVGtgdafg-------------sggrfNTCFHVAte--etRFLIDCGAss----------------------------- 39  Rose...
Feature 1                                                         # # ##                                    
3DHA_A                   83 eedrivnILKRVgye-------------pddLLYIISSHLHFDHAGGNGAFt-----------nTPIIVQrteyeaalhr 138 Baci...
4B87_A                   46 -------YGVVEg------------------CTAYFLTHFHSDHYAGLSKHf-----------tFPVYCSeitgnllk-- 87  human
2AZ4_A                   54 linnrlvPELKDlydprlgyeyhgaedkdyqHTAVFLSHAHLDHSRMINYLdp----------aVPLYTLketkmilnsl 123 Ente...
2OHH_A                   59 ---elmaRVEDAlqqv-----------gmerVDYIIQNHVEKDHSGVLVELhrr-------fpeAPIYCTevavkgll-- 115 Meth...
2P4Z_A                   55 ----fikNCGLMgid-------------vgrIKKVVLTHGHYDHIGGLKGLler-------npeVKIYTHkeilnkkyam 110 Cald...
2WYM_F                   96 rttpfvlDPFAIr-----------------qIDAVLATHDHNDHIDVNVAAavmqn----caddVPFIGPktcvdlw--- 151
P28607                   70 ------aGQLAKvgld------------iknVDAVFLSHLHFDHTGGLPAIlslrwq-tsarneLVVYGPp--------- 121 Pseu...
AAR26319                 46 ---lgeiMMREGap----------------qEATLFFSHLHWDHVQGFPFFtpawl----ptseLTLYGPgangaqalqs 102 Myxo...
PRJNA285312:ABT55_17050 106 ------aGLRPEdl---------------psIDAVLISHNHYDHLDLPSVKsv----------dAPVIAGlgma------ 148 Ente...
EDM71848                 40 -----miALKAMqid-------------raaIDTIFITHFHGDHFGGLPYFmldaqffakrrapLTIVGPeglqkafvqv 101 Rose...
Feature 1                                                                                                   
3DHA_A                  139 e-----------eymkecilphLNYKIIEg----------------------------DYEVVp-------GVQLLYTPg 172 Baci...
4B87_A                   88 ---------------nklhvqeQYIHPLPl----------------------------DTECIvn----gvKVVLLDAN- 119 human
2AZ4_A                  124 nrkg----dflipspfeeknftREMIGLNk----------------------------NDVIKvg----eiSVEIVPVD- 166 Ente...
2OHH_A                  116 --------------khypslreAEFMTVKt----------------------------GDVLDlg----gkTLTFLETPl 149 Meth...
2P4Z_A                  111 rkggq--feeigfdlsfyekykNNFVLIDk----------------------------DAEIEe-------GFYVITNTd 153 Cald...
2WYM_F                  152 ---------------igwgvpkERCIVVKp----------------------------GDVVKvk----diEIHALDAFd 184
P28607                  122 ----------------------GTQQTVDgifeymtygtlghygvpgqvpapantnikVVEVEdgtqlklpDFTVDVIRn 179 Pseu...
AAR26319                103 elaaqmqplhfpvplstmrsrmDFRSALH-----------------------------ARPVEv------gPFRVTPIDv 147 Myxo...
PRJNA285312:ABT55_17050 149 ------------------sflaKKGISASel-------------------------dwWQSIDig----pvRVTFVPAQh 181 Ente...
EDM71848                102 meta-----fagssgtvpkfdlQLIELQPg----------------------------EPLVIg-------SVTVKAARv 141 Rose...
Feature 1                                          ##                                 #                     
3DHA_A                  173 -----------------------HSPG-----------HQSLFIEteq--sgSVLLTIDasytkenfedevp-------- 208 Baci...
4B87_A                  120 -----------------------HCPG-----------AVMILFYlpn--gtVILHTGDfrad----------------- 146 human
2AZ4_A                  167 -----------------------HDAYg----------ASALLIRtp---dhFITYTGDlrlhg---------------- 194 Ente...
2OHH_A                  150 ----------------------lHWPD-----------SMFTLLDe-----dGILFSNDafgqhlccpqrldreipeyil 191 Meth...
2P4Z_A                  154 itydnefttknffvekegkripdKFLD-----------EVFVVVKee---dgINVVTGCshag----------------- 202 Cald...
2WYM_F                  185 rtalitlpa----dqkaagvlpdGMDDr----------AVNYLFKtp---ggSLYHSGDsh------------------- 228
P28607                  180 ----------------------sHYSWpkgseewkkfqALSFKFSlq---dyTVVYTGDtgp------------------ 216 Pseu...
AAR26319                148 ----------------------pHPQG-----------CLAYRLEad---ghSFVYATDvevr----------------- 174 Myxo...
PRJNA285312:ABT55_17050 182 ysrr--------------gltdvNETL-----------WGGFILEga---saCIYHSGDtgyfd---------------- 217 Ente...
EDM71848                142 ----------------------rHGPV-----------DGPFLAYrfevegkRLAYTGDtewvdtl-------------- 174 Rose...
Feature 1                                                                              #
3DHA_A                  209 ----------fagfdpelalssIKRLKEvvkk-------------------ekpiIFFGH 239 Bacillus thuringiensis s...
4B87_A                  147 ------------------psmeRSLLADqk-----------------------vhMLYLD 165 human
2AZ4_A                  195 -----------------hnreeTLAFCEkakh--------------------telLMMEG 217 Enterococcus faecalis V583
2OHH_A                  192 mdaarkfyanlitplsklvlkkFDEVKElglle------------------riqmIAPSH 233 Methanothermobacter ther...
2P4Z_A                  203 ------------------ilniLETARNrfgvs-----------------yikslIGGFH 227 Caldanaerobacter subterr...
2WYM_F                  229 ---------------------ySNYYAKhgneh------------------qidvALGSY 249
P28607                  217 -------------------ssaVEKLSSg-------------------------vDLLVS 232 Pseudoalteromonas carrag...
AAR26319                175 ------------------vqelAPEVGRlfegadvlcldaqytpdeyegrkgvakKGWGH 216 Myxococcus xanthus
PRJNA285312:ABT55_17050 218 -----------------gfreiGRRFPVidaall----------------pigayEPSWF 244 Enterobacter cloacae
EDM71848                175 ----------------ydvcsdADCLIAeayf--------------------fekKVPFH 198 Roseobacter sp. AzwK-3b

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