2HDC,2HFH


Conserved Protein Domain Family
FH_FOXD3

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cd20047: FH_FOXD3 
Click on image for an interactive view with Cn3D
Forkhead (FH) domain found in Forkhead box protein D3 (FOXD3) and similar proteins
FOXD3, also called HNF3/FH transcription factor genesis, acts as a transcriptional repressor that binds to the consensus sequence 5'-A[AT]T[AG]TTTGTTT-3'. It also acts as a transcriptional activator. It promotes development of neural crest cells from neural tube progenitors and restricts neural progenitor cells to the neural crest lineage while suppressing interneuron differentiation. FOXD3 is required for maintenance of pluripotent cells in the pre-implantation and peri-implantation stages of embryogenesis. The FH domain is a winged helix DNA-binding domain.
Statistics
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PSSM-Id: 410821
Aligned: 8 rows
Threshold Bit Score: 203.41
Created: 18-Dec-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 35 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2HDC; Rattus norvegicus FOXD3 binds DNA through its Forkhead domain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ######                ##                 ## ### ###  #     ###### # ######    
2HDC_A         1 XKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80  Norway rat
2HFH_A         2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81  Norway rat
Q9UJU5       140 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 219 human
Q5M7L9        91 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 170 tropical clawed...
P79772       116 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 195 chicken
XP_005996902  95 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 174 coelacanth
NP_571365     95 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 174 zebrafish
XP_007907140  93 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 172 elephant shark
Feature 1                    #####
2HDC_A        81 QSEDMFDNGSFLRRRKR 97  Norway rat
2HFH_A        82 QSEDMFDNGSFLRRRKR 98  Norway rat
Q9UJU5       220 QSEDMFDNGSFLRRRKR 236 human
Q5M7L9       171 QSEDMFDNGSFLRRRKR 187 tropical clawed frog
P79772       196 QSEDMFDNGSFLRRRKR 212 chicken
XP_005996902 175 QSEDMFDNGSFLRRRKR 191 coelacanth
NP_571365    175 QSEDMFDNGSFLRRRKR 191 zebrafish
XP_007907140 173 QSEDMFDNGSFLRRRKR 189 elephant shark

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