1ZLL,2KYV,2M3B


Conserved Protein Domain Family
Phospholamban

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cd20250: Phospholamban 
Phospholamban bioactive peptide and similar proteins
Vertebrate phospholamban (PLN) belongs to a family of bioactive peptides which includes vertebrate sarcolipin (SLN), and the invertebrate sarcolamban (SCLA, and SCLB). SCLA and SCLB are encoded within a single putative noncoding transcript, pncr003:2L; PLN and SLN are each encoded within a single exon of a spliced transcript. PLN is chiefly expressed in the cardiac muscle, while SLN is expressed in the atria of the heart and embryonic slow-type skeletal muscle; SCL is found in cardiac and somatic muscle of Drosophila melanogaster. PLN and SLN are each a single-pass transmembrane alpha-helix that interacts directly with the sarcoplasmic reticulum (SR) calcium pump (SERCA), lower its affinity for Ca2+, thereby decreasing the rate of Ca2+ reuptake into the SR from the sarcoplasm. In the heart, PLN and SLN inhibit the activity of SERCA2a isoform and function as important regulators of cardiac contractibility and disease. SCLA and SCLB are each predicted to form a single-pass transmembrane helix, localize to the SR with the SR calcium pump (Ca-P60A), and dampen its activity. PLN and SLN differ in their interaction with SERCA; PLN is an affinity modulator of SERCA. It is thought to form a pentamer in the membrane.
Statistics
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PSSM-Id: 380750
Aligned: 13 rows
Threshold Bit Score: 51.2904
Created: 19-Jul-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:in membranes, phospholamban forms pentamers that have been proposed to function either as a storage for active monomers or as ion channels
  • Structure:2KYV: rabbit nonphosphorylated phospholamban, pentamer interface; contacts at 4A
  • Comment:in this pinwheel topology the pentameric pore is too narrow to fit a fully hydrated ion
  • Structure:2M3B: rabbit phosphorylated phospholamban (T state), phosphorylated, pentamer interface; contacts at 4A
  • Comment:in this pinwheel topology one monomer is contacting 3 other monomers in the pentamer; the pentameric pore is too narrow to fit a fully hydrated ion;
  • Structure:1ZLL: human phospholamban in a bellflower-like assembly, pentamer interface; contacts at 4A
  • Comment:in the bellflower-like assembly the monomer contacts 2 other monomers in the pentamer, and forms a pentameric pore which could allow passage of small ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              ##### ## ### ###### ###### ###
1ZLL_A         1 MEKVQYLTRSAIRRASTIEMPQQARQKLQNLFINFCLILICLLLICIIVMLL 52  human
2KYV_A         1 MEKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLILICLLLICIIVMLL 52  Escherichia coli
2M3B_A         1 MEKVQYLTRSAIRRAXTIEMPQQARQNLQNLFINFCLILICLLLICIIVMLL 52  rabbit
P61012         1 MDKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLILICLLLICIIVMLL 52  dog
P61015         1 MEKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLILICLLLICIIVMLL 52  rabbit
A4IFH6         1 MDKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLISICLLLICIIVMLL 52  cattle
ROJ78751      57 MERVQHMTRSAIRRASNIEVNPQTKRNLQDLIINFSLILICLLLIYIIVLLM 108 Anabarilius grahami
XP_018120856   1 MEKVQHITRSAMRRASNIEVNPQTRQNLQELFINFSLILICLLVICIIVMLL 52  Xenopus laevis
XP_008322909   1 MERVQHMTKTAIRRASQIEVNPQAKRNLQELFVNFTLILICLLLIYIIVLLS 52  Cynoglossus semilaevis
NP_001188490   1 MEKVQHMTRAAIRRASTMEVPQQAKQNMQELFVNFCLILICLLLIYIIVLLI 52  zebrafish
XP_007897842   1 MEKVQQMTRSAIRRASAIEVNPQARRNLQELFVNFTLILICLLLMYIIVLLM 52  elephant shark
NP_990741      1 MEKVQYITRSALRRASTLEVNPQARQRLQELFVNFCLILICLLLICIIVMLL 52  chicken
XP_006000008   1 MDKVQHATRSALRRASNIDINPQVRQNLKELFINFCLILICLLLICIIVMLL 52  coelacanth

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