6WT6,4EF4,4F5D,4JC5,4KBY,4QXP,5CFQ,5GRM,6A03,6CFF,6WT7,6NT6,4F5W


Conserved Protein Domain Family
STING_C_metazoan-like

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cd22658: STING_C_metazoan-like 
Click on image for an interactive view with Cn3D
C-terminal domain of Stimulator Of Interferon Genes (STING) protein in metazoans
This model represents the metazoan cytoplasmic ligand-binding domain (LBD, or cyclic-dinucleotide-binding domain) of Stimulator Of Interferon Genes (STING) protein, also called transmembrane protein 173 (TMEM173), mediator of IRF3 activation (MITA), endoplasmic reticulum IFN stimulator (ERIS), or N-terminal methionine-proline-tyrosine-serine plasma membrane tetraspanner (MYSA). STING is a receptor that senses foreign cyclic dinucleotides that are released during bacterial infections as well as in endogenous cyclic GMP-AMP (cGAMP) signaling during viral infection and anti-tumor immunity. STING activates downstream transcription factor IRF3 (interferon regulatory factor 3) and STAT (signal transducer and activator of transcription) via TBK1 ((Tank binding kinase 1), which are responsible for antiviral and innate immune response against intracellular pathogens. STING's activation of IRF3 and STAT induces the production of type 1 interferon and target genes involved in immune cell homing such as chemokines, respectively. STING may also function as a direct cytosolic DNA sensor. STING also has a role in B cell adaptive immunity through modulating B cell receptor signaling via PI3K (phosphatidylinositol 3-kinase). STING is encoded by the STING1 gene in mammals. It is an endoplasmic reticulum (ER) membrane protein that contains four transmembrane helices followed by a cytoplasmic ligand-binding and signaling domain. The cytoplasmic domain forms a homodimer, which undergoes conformational changes upon binding to cGAMP. Metazoan STING is larger and less compact than the bacterial homologs, so that the metazoan insertions into the core bacterial fold are necessary for induction of autophagy, and the C-terminal tail contains motifs for the recruitment of kinases and transcription factors in vertebrates. Bacterial STING proteins have also been shown to be functional cyclic dinucleotide receptors.
Statistics
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PSSM-Id: 439310
Aligned: 26 rows
Threshold Bit Score: 240.236
Created: 19-Oct-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindinghomodimer
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ##  ##                                                                  
6WT6_A       174 NLAHGFAWGYYYGYLKIILPDLDKTVRQWRRVNnaeg----rmsEKLFLFFPQScrCRDSIAde----sSLIKHRGHLPI 245 Pacific oyster
5CFQ_A         3 NVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRske-----kfvKKMFILIPSNcfWDDKIPgsdydpqNRITFEGNTEP 77  starlet sea ane...
6A03_A         5 NVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHknvlg--gignHRLHILFPLDcgVPDDLSva----dPNIRFLHELPQ 78  Sus scrofa
6WT7_A       174 NLAHGFAWGYYYGYLKIILPDLDKTVRQWRRVNnaeg----rmsEKLFLFFPQScrCRDSIAde----sSLIKHRGHLPI 245 Pacific oyster
NP_001265766 151 NVAHGLAWSFYIGYLKFLLPALEVNVREYSRRErl-------ssPRLHILLPLNarVPSKPGee----dTNVVFHENLPD 219 zebrafish
XP_014340157  98 GVAHGLAWSYYLGYLKLVLPELEDRIKSYNVSHgnllk--hketWRLHILLPLScsIFDNLAdv----dSNIEFLDNLSE 171 coelacanth
XP_015205204 175 NVGHGLAWSFYTGYLRLILPTGLEASIEEYHASrsaavlqhrdtWKLHILIPLSccIPDKLEea----dDNISFLDNLPD 250 spotted gar
XP_020385478 159 NVAHGLAWSYYIGYLKLILPDLEERIKRHNVRNvldc----kenWKLYILIPFSckVYGKLEkm----dSKIEFYQNLPE 230 whale shark
RXM94758      40 NVAHGLAWSFYIGYLKLVLPRLKDSIQTFCDKGnfvlk--ckdtWKLHILMPLSctIPDKLEee----dSNIEFLDNLPD 113 sterlet
XP_018588904 149 DVACGLAWSFYTGYLKLVLPRLRATIEEYRAQHrsnil-pqrdfWKVNILVPLSasVFNQLEdm----dQRIRFYENLPE 223 Asian bonytongue
Feature 1                  ###                   #  ##                                           
6WT6_A       246 ITKDRAGIIERQYKNTIYSVTDdngEDYFFAGEYIGVIHTMFEMEQNATTgLQTREKYVQSMRFYLTLKRILDTDPecsK 325 Pacific oyster
5CFQ_A        78 LEKTRGGVFLRHYKHSVYEIKDgenEPWFCIMEYATPLLTLYDMSVAQPGeLSREERDAQVVVFLRKLQDILEGDRacqG 157 starlet sea ane...
6A03_A        79 QSADRAGIKGRVYTNSIYELLEngqPAGVCVLEYATPLQTLFAMSQDGRAgFSREDRLEQAKLFCRTLEDILADAPeaqN 158 Sus scrofa
6WT7_A       246 ITKDRAGIIERQYKNTIYSVTDdngEDYFFAGEYIGVIHTMFEMEQNATTgLQTREKYVQSMRFYLTLKRILDTDPecsK 325 Pacific oyster
NP_001265766 220 LKLDRAGVRKRSYTNSVYKITHn-nETFSCILEYATPLLTLYQMSQESSAgFGERERKQQVLLFYRTLSQILDNSLecrN 298 zebrafish
XP_014340157 172 LQINRAGIKGRSYKHSLYQVLDedkRPHYCILEYATPLKSLLEMSKEASAeFTKEDRLEQTKLFYRTLKDILDNSQecrG 251 coelacanth
XP_015205204 251 ITIDRAGIRKRVFKHSIYTVYDqakRPHYCVVEYATPLVTLYQMSQEAMAgFDAEERLQQSTLFFRTLRDILESSRecrG 330 spotted gar
XP_020385478 231 ICIDRAGIKARSYKNSIYTIYDqnnRPHHCVLEYATPLGSLFEMSNDASAaFSKEKRLEQAKLFYVTLVNILNNSQecaG 310 whale shark
RXM94758     114 IVIDRAGVRRRVYKHSLYAVYDdakRPHHCVLECATPLLSLYEMSKESLAeFSTEDRLEQAKLFYRTLKDILDNSRdcrN 193 sterlet
XP_018588904 224 TVIDRAGIRSRVYKHSVHAVYDdqkRPHYCVVEYATPLDTLHQMSHDSRVgFGVNERRQQVLLFYRTLKEILDNSPecrN 303 Asian bonytongue
Feature 1                                             
6WT6_A       326 KCKIVFYKDvnn--------ssDAMPRLICNEIKNQL 354 Pacific oyster
5CFQ_A       158 KYELVTFSPd------------RDLADVMLRKLKDSE 182 starlet sea anemone
6A03_A       159 NCRLIVYQEpte-------ggsFSLSQEILRHLRQEE 188 Sus scrofa
6WT7_A       326 KCKIVFYKDvnn-------ssdAMPRLICNEIKNQLR 355 Pacific oyster
NP_001265766 299 RYRLILLNDeht-------gdpHYLSRELFQNLKQQD 328 zebrafish
XP_014340157 252 RFRLVIYDDcqdvldgedsgksHFLSKELLRHLNQQQ 288 coelacanth
XP_015205204 331 RYRLILLDD-------------PQRPPPVLDPIPRPT 354 spotted gar
XP_020385478 311 YFRLIPYDDdleer----qmdsHFLSTMILKHLAQER 343 whale shark
RXM94758     194 SYRFIMYDDsea-------aedPHFLSKVILKHLQQQ 223 sterlet
XP_018588904 304 RYQLILLDDdcda-----eadpHFLSKEILKYVQQPQ 335 Asian bonytongue

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