2J12


Conserved Protein Domain Family
IgV_CAR_like

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cd20960: IgV_CAR_like 
Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins
The members here are composed of the Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins. CAR, which is encoded by human CXADR gene, is a cell adhesion molecule of the Immunoglobulin (Ig) superfamily. The CAR acts as a type I membrane receptor for group B1-B6 coxsackie viruses and subgroup C adenoviruses. For instance, adenovirus interacts with the coxsackievirus and adenovirus receptor to enter epithelial airway cells. The CAR is also shown to be involved in physiological processes such as neuronal and heart development, epithelial tight junction integrity, and tumor suppression. The CAR is a component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. The CAR is also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. The CAR is composed of one V-set and one C2-set Ig module, a single transmembrane helix, and an intracellular domain. This group belongs to the V-set of IgSF domains, having A, B, E and D strands in one beta-sheet and A', G, F, C, C' and C" in the other
Statistics
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PSSM-Id: 409552
Aligned: 7 rows
Threshold Bit Score: 188.428
Created: 17-Sep-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ###                                                                             
2J12_B         8 LSITt-pEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISpadnqkvDQVIILYSGDKIYDdyypdlKGRVHFTSndl 86  human
Q90Y50        23 LQITstgQTSIEKASGESVKLDCQFTLASDDSGPLDIEWSLQpsdnqkeEKVVIVYSGDRAFEhyydplKGRVHFNSpdp 102 zebrafish
CAF98571      40 VLAAc-aQTEMKRVVGDNATLPCHHQFWVGDDPTLDIEWLLLkp----tNRVVITYFAGRVFDpne-aeRGRVAFAGey- 112 Tetraodon nigro...
EAW67545      39 YVGTlgtHTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTdne--gnQKVVITYSSRHVYNnlteeqKGRVAFASnf- 115 human
XP_417886     14 VWLAe-aQTEFKRVAEENVTLPCHHRLGLLEQGSLDIEWLLHtse--svQKAVITYSGGHVYDdlneeqKGRVSFTSnf- 89  chicken
NP_001008177  14 VLGAl-aQTEIKLVADENVTLPCRHSLGHLGIQSLDIEWLSNisd--hgKQVLLSYSGGQVYNae--nhKGRYSFVSky- 87  western clawed ...
XP_416681     24 LSITs-aESAFEKAQGERVTLPCTFELSEEDVGTLDIEWVLIpadiqkkEETIILYSGDRIYNhyhpalAGRLQFTSsdp 102
Feature 1                                              
2J12_B        87 ksGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 124 human
Q90Y50       103 knGDASMNIMGLKATDTGTYQCKIKKVPGIASRKYLLT 140 zebrafish
CAF98571     113 lkGDASLIISDLSLTDSGEYSCKVKTGAQYHWSTIRLI 150 Tetraodon nigroviridis
EAW67545     116 laGDASLQIEPLKPSDEGRYTCKVKNSGRYVWSHVILK 153 human
XP_417886     90 raGDASLQIISLQSSDAGKYICKVKNAGQYEWAHITLK 127 chicken
NP_001008177  88 leGDASLFIRSLQPSDAGQYICKVKNAGQYQWSFITVI 125 western clawed frog
XP_416681    103 ksGDGSVDILNLKSADTGTYQCKVKKAPGVESLKIQLN 140

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