1H6O,1H6P


Conserved Protein Domain Family
TRFH

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cd00280: TRFH 
Click on image for an interactive view with Cn3D
Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Statistics
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PSSM-Id: 238174
Aligned: 10 rows
Threshold Bit Score: 288.961
Created: 25-Jan-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1H6P; TRF2 homodimer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            #  #             #   #   #         ##### 
1H6O_A      6 VAEAEAVAAGWMLDFLCLSLCRAFRDgrSEDFRRTRNSAEAIIHGLSSLTAcQLRTIYICQFLTRIAAGKTLDAQFENDe 85  human
AAC02531   67 VAEAEAVAAGWMLHFLCLSLCRAFRDgrSEDFRRTRNSAEAIIHGLSSLTAcQLRTIYICQFLTRIAAGKTLDAQFENDe 146 Chinese hamster
CAB56220   18 SDDREQAVNRWVLQFYFHQAVAAYRAgrNRDFRQLRDVMQALLVRPLEREPaVAQMLRVMQFLSRIEEGENLDCTFDKEt 97  chicken
AAN77122   54 VAEVEAVAAGWMLDFLCLSLCRAFRDgrSEDFRRTRDSAEAIIHGLQRLTAyQLKTVYICQFLTRVASGKALDAQFEVDe 133 western wild mouse
AAB81136   45 EARLEEAVNRWVLKFYFHEALRAFRSsrYRDFRQIRDIMQALLVRPLGKEHtVSRLLRVMQCLSRIEEGENLDCSFDMEa 124 house mouse
1H6P_A      3 EARLEEAVNRWVLKFYFHEALRAFRGsrYGDFRQIRDIMQALLVRPLGKEHtVSRLLRVMQCLSRIEEGENLDCSFDMEa 82  human
AAM28210    7 EPSWEQIINRWSFDFYAFQAFSAFRNgdYTAFTHFINIIESVVVRPVDGHTdMIPKLRLMQFLSRINNGDKLDLTFEEPk 86  zebrafish
AAH24890   45 EARLEEAVNRWVLKFYFHEALRAFRGsrYGDFRQIRDIMQALLVRPLGKEHtVSRLLRVMQCLSRIEEGENLDCSFDMEa 124 human
AAQ08949   10 FDDTAAVATNWMCDFMFASMCFYFREdrTEDFQRSTHMLEWLLEGSQKLDA-HRKTIPIAQFLMRVAEGKNLDSQFDTDe 88  African clawed frog
NP_989711  18 SALAEAVAADWVLEFSCCCLCRYFVEecEAEFRRWRDVAQAVSNGFSKVTThQKKMVYLCQLLIRIAEGKRLECHFENDt 97  chicken
Feature 1           #  ##  #                                                                  
1H6O_A     86 riTPLESALMIWGSIEKEhdk---lheEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG-DPNSHMpfkSKLLMIISQKd 161 human
AAC02531  147 riTPLESALMIWGSIEKEhdk---lheEIQNLIKIPAIAVCMENGNFKEAEEVFERIFG-DPNSHMpfkSKLLMIISQKd 222 Chinese hamster
CAB56220   98 elTPLESAIGILQLIAKEfsvpekkieLIHKVLKEAAVIVCIKNKEFSKALAVLKRHMEkDTGNQKk-rTELQTIIREKn 176 chicken
AAN77122  134 riTPLESTLMIWNSIEKEh-------dEIKNLIKIQAVAVCMEIGSFKEAEEVFERIFG-DPEFYTsleRKLLKIISQKd 205 western wild mouse
AAB81136  125 elTPLESAINVLEMIKTEftltdsmveSSRKLVKEAAVIICIKNKEFEKASKILKKYMSkDPTTQKl-rTDLLNIIREKn 203 house mouse
1H6P_A     83 elTPLESAINVLEMIKTEftlteavveSSRKLVKEAAVIICIKNKEFEKASKILKKHMSkDPTTQKl-rNDLLNIIREKn 161 human
AAM28210   87 --TPLESALDVLESICRDmsvphteqqLIRHAISEMLVMVCIRSGEFEKAEEMLKHFSS-SSDSAGk-kKLLLHLIRCRr 162 zebrafish
AAH24890  125 elTPLESAINVLEMIKTEftlteavveSSRKLVKEAAVIICIKNKEFEKASKILKKHMSkDPTTQKl-rNDLLNIIREKn 203 human
AAQ08949   89 slTPLETALMAFNQIEEEedlk-hlheEIELLLKVQAVVTCMEKGRFKLSAEILDRLFKeSGSNKYl-rMKLTMLIEKKd 166 African clawed frog
NP_989711  98 tiSPLESALSFWTLLEREesklntlheEIRRLIQIQVVAVYMEKGYYKEAAEVLERLFT-DSESHKplrMKLAAIVKSKd 176 chicken
Feature 1                                               
1H6O_A    162 tFHSFFQHFSYNHMMEKIKSYVNYVLSEKSsTFLMKAAAKVV 203 human
AAC02531  223 tFHSFFQHFSYYHMMEKIKSYVNYVLSEKSsTFLMKAAAKVV 264 Chinese hamster
CAB56220  177 rAHPIIRDFSYVNFQQYMFQFLKTYVDTSE-PLLVTMMKSLN 217 chicken
AAN77122  206 vFHSLFQHFSYNCMMEKIQSYVDYVLNEKSsSFLLKAATKVV 247 western wild mouse
AAB81136  204 lAHPVIQNFSYEVFQQKMLRFLESHLDDTE-PYLLTMAKKAL 244 house mouse
1H6P_A    162 lAHPVIQNFSYETFQQKMLRFLESHLDDAE-PYLLTMAKKAL 202 human
AAM28210  163 sSHTVLQLSSYSHFKQDMLQFVERLFSVPE-PFLLQMLRRSG 203 zebrafish
AAH24890  204 lAHPVIQNFSYETFQQKMLRFLESHLDDAE-PYLLTVRLGPS 244 human
AAQ08949  167 pYHEFLQNFTYAQMMKKIKSYIALKMKERPsVFLLKAAAKVV 208 African clawed frog
NP_989711 177 pYVPLLQSFSYSLLLSKVKSYVKLFLKENRtNFLLQAATKQV 218 chicken

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