2CR5


Conserved Protein Domain Family
UBX_UBXN8

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cd01774: UBX_UBXN8 
Click on image for an interactive view with Cn3D
Ubiquitin regulatory domain X (UBX) found in UBX domain protein 8 (UBXN8) and similar proteins
UBXN8, also termed reproduction 8 protein (Rep8), or UBX domain-containing protein 6 (UBXD6), or D8S2298E, belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN8 functions as a cofactor of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. UBXN8 is a transmembrane protein that localizes to the endoplasmic reticulum (ER) membrane with its UBX domain facing the cytoplasm. It facilitates efficient ER-associated degradation (ERAD) by tethering p97 to the ER membrane.
Statistics
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PSSM-Id: 340472
Aligned: 9 rows
Threshold Bit Score: 123.992
Created: 9-Jun-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative UBX-p97 interaction site [polypeptide binding site]
Evidence:
  • Comment:based on the structural evidence of the Rattus norvegicus UBX domain of p47/UBXN2C (1S3S) bound with p97, contacts at 4A
  • Comment:Hexameric p97 N terminal domains are complexed with UBX domain of p47 through a loop that is highly conserved in UBX domains but is absent in ubiquitin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # # ##  ## #                               ## #                 #### # # 
2CR5_A        22 EVVTVALRCPnGRVLRRRFFKSWNSQVLLDWMMKVGYHksLYRLSTSFPRRALEVeGGSSLEDIGITVDTVLNVEE 97  house mouse
AAH81250     208 GVITIALRCPsGRVFKRRFYTSCSSLVLLDWMMKLGYHpvIYTICSTFPRCQLEFkSSSSLEDIGILKDIVLNVEE 283 African clawed frog
NP_001019583 191 GAVKIALRFPgRRAIHRRFLKTWSSQLLLEWMMKTGYPpaLYTLYMSYPRTEVQTaADMSLEEAGIHTDTLLNVEE 266 zebrafish
XP_002732347 227 MVMTIALKTPtGRTHRRRFLYTDNIQILIDYMTKLGYHptMYSISSTYPRHCLTSdLEKTFEDLGLTKDVALVIEE 302 Saccoglossus kowale...
XP_001193956 151 KSITVALRGTaSIVKRRRFLFTEKVQVLLNWMSKLGYHqkLYTLVTTYPRQDLSQhAADTLEEAGIDHDVALVVEE 226 purple sea urchin
ESO99605     178 NTVLVKLRTPiRSICQRNFLISNNIQELLDYMTTVGYSqtFYTLSTTYPRTVLTDrVNTTLEDLQFIKQVTLNIEE 253 owl limpet
ELU06844     221 GAVTIVLRFPgSRPQRRRFLTEHTVQMLMDFMQSVGFHqkVYSIFQTYPRQIVSDdATKTLAEVGIVSDVALNVEE 296 Capitella teleta
XP_005820787 289 SATHIQLRFPdGSRHSRRFLDTETLKVVLDFMFVCGADpeKHTLATAFPRKILDE-ADKSLKDLGLSHHISLNVEK 363 Guillardia theta CC...
XP_013392755 195 DTVFLSFRTPlGKIHRRRFMQSDKIQVLLDYITKLGYHqtIYTISTTYPRVTLSDqADYTLKDQGLTVDMMLNLEL 270 Lingula anatina

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