3A4O,2ZV8


Conserved Protein Domain Family
PTKc_Lyn

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cd05072: PTKc_Lyn 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinase, Lyn
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The Lyn subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270657
Aligned: 5 rows
Threshold Bit Score: 603.186
Created: 22-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:2ZV8; Mus musculus Lyn kinase binds AMP-PNP; contacts at 4A.
  • Structure:3A4O; Human Lyn kinase binds staurosporine; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #       #           # #                                           
3A4O_X         7 AWEIPRESIKLVKRLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYII 86  human
2ZV8_A         6 AWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYII 85  house mouse
BAA20078     215 AWEIPRESIKMVRKLGAGQFGEVWMGFYNNSTKVAVKTLKPGSMSVQAFMEEANLMKTLQHDKLVRLYAVVSKEEPIYII 294 African clawed ...
NP_001006390 219 AWEIPRESIKLVKKLGAGQFGEVWMGYYHNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYII 298 chicken
NP_001004543 237 AWEISKDSIKMVKKLGAGQFGEVWMAFYNNSTKVAVKTLKPGTMSVEAFLEEANLMKTLQHDRLVRLYAVVTKTEPIYII 316 zebrafish
Feature 1        ####  ##  #                                         #  #          #             
3A4O_X        87 TEYMaKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT 166 human
2ZV8_A        86 TEFMaKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT 165 house mouse
BAA20078     295 TEYMaKGSLLDFLKSDEGGKVILPKSIDFSAQIAEGMAYIEKKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT 374 African clawed ...
NP_001006390 299 TEFMaKGSLLDFLKSDEGSRLMLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSDLLMCKIADFGLARVIEDNEYT 378 chicken
NP_001004543 317 TEYMaNGSLLDFLKSQAGSKIQLPKLIDFSAQIAEGMAYIEKKNYIHRDLRAANVLVSEMLLCKIADFGLARVIEDDQYT 396 zebrafish
Feature 1                                                                                        
3A4O_X       167 AREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRVENCPDELYDIMKM 246 human
2ZV8_A       166 AREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELYDIMKM 245 house mouse
BAA20078     375 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGVLLYEIITFGKIPYPGMSNSDVMSALQRGYRMPRMENCPEELYDIMKQ 454 African clawed ...
NP_001006390 379 AREGAKFPIKWTAPEAINYGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMVALQRGYRMPRMETCPAELYDIMKT 458 chicken
NP_001004543 397 AREGAKFPIKWTAPEAINYGSFTIKSDMWSFGVLLYEIITYGKIPYPGMSNSEVMSSVQRGYRMPRPENCPVELYEIMTT 476 zebrafish
Feature 1                                        
3A4O_X       247 CWKEKAEERPTFDYLQSVLDDFYTATEGQYQQ 278 human
2ZV8_A       246 CWKEKAEERPTFDYLQSVLDDFYTATEGQYQQ 277 house mouse
BAA20078     455 CWKEKAEERPTFDYLQSVLDDFYTATETQYQQ 486 African clawed frog
NP_001006390 459 CWKDKAEERPTFDYLQSVLDDFYTATEGQYQQ 490 chicken
NP_001004543 477 CWKNKPEDRPTFDYIQSVLDDFYTATEGQYQQ 508 zebrafish

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