estd221 (Palta et al. 2015)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Priit Palta
- Description:
- The study aimed to: i) call copy number variants (CNVs) from Yoruban and Estonian family trios ii) phase called CNV regions in families; iii) determine allelic variability in unambiguously phased CNV regions. See Variant Summary counts for estd221 in dbVar Variant Summary.
- Publication(s):
- Palta et al. 2015
Detailed Information: Download 699 Variant Regions, Download 2313 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 55 | 180 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 73 | 236 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 40 | 126 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 52 | 219 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 25 | 96 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 39 | 136 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 40 | 142 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 60 | 224 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 33 | 70 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 27 | 128 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 33 | 129 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 37 | 95 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 24 | 57 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 27 | 59 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 29 | 78 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 19 | 82 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 12 | 55 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 20 | 60 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 17 | 34 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 13 | 35 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 7 | 35 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 13 | 27 | Remapped | NC_000022.11 |
| NT_187517.1 | Chr1|NT_187517.1 | 1 | 1 | Remapped | NT_187517.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 1 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 1 | Remapped | NW_017852928.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 1 | Remapped | NT_187523.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 1 | Remapped | NT_187647.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 2 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 5 | Remapped | NW_019805489.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 1 | Remapped | NT_167250.2 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 8 | Remapped | NT_187542.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 3 | 9 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 1 | 4 | Remapped | NT_167247.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 1 | Remapped | NW_009646200.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 2 | Remapped | NT_187558.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 0 | 7 | Remapped | NT_187561.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 2 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 1 | 1 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 0 | 1 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 1 | Remapped | NW_019805493.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 1 | Remapped | NT_187566.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 1 | 1 | Remapped | NW_018654717.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 4 | Remapped | NW_003315936.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 1 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 2 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 6 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 4 | 6 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 2 | Remapped | NT_187601.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 2 | 3 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 0 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 0 | 1 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 4 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 2 | 3 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 4 | 14 | Remapped | NT_187607.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 1 | 2 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 2 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 0 | 6 | Remapped | NT_187663.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 2 | 3 | Remapped | NT_187614.1 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 14 | Remapped | NW_003315953.2 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 2 | Remapped | NW_003315956.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 1 | 2 | Remapped | NT_187693.1 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 2 | Remapped | NW_003571060.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 2 | Remapped | NW_003315962.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 1 | 2 | Remapped | NW_003571054.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 3 | 5 | Remapped | NT_187629.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 5 | Remapped | NT_187633.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 56 | 181 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 73 | 236 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 40 | 126 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 52 | 219 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 25 | 96 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 39 | 136 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 40 | 142 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 60 | 224 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 33 | 70 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 28 | 130 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 33 | 129 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 37 | 95 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 24 | 57 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 28 | 60 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 29 | 77 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 19 | 82 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 12 | 57 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 20 | 60 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 17 | 34 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 13 | 35 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 7 | 35 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 14 | 30 | Remapped | NC_000022.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 1 | 8 | Remapped | NW_003871055.3 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 1 | 1 | Remapped | NW_003871058.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 4 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 3 | 9 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 1 | 4 | Remapped | NT_167247.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 1 | 1 | Remapped | NW_003571038.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 1 | 24 | Remapped | NW_003871068.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 4 | Remapped | NW_003315936.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 3 | 5 | Remapped | NW_004166863.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 0 | 1 | Remapped | NW_003315949.1 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 14 | Remapped | NW_003315953.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 2 | Remapped | NW_003315956.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 2 | Remapped | NW_003315962.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 6 | Remapped | NW_003571053.2 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 1 | 1 | Remapped | NW_004775434.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 56 | 181 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 73 | 236 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 40 | 126 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 52 | 219 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 25 | 96 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 39 | 136 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 40 | 142 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 60 | 224 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 33 | 70 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 28 | 130 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 33 | 129 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 37 | 95 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 24 | 57 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 28 | 60 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 29 | 79 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 19 | 82 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 12 | 57 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 20 | 60 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 17 | 34 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 13 | 35 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 7 | 35 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 14 | 30 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 56 | 55 | 0 | 0 | 0 | 1 | 181 | 173 | 0 | 0 | 0 | 8 |
| NC_000002.10 | Chr2 | 73 | 73 | 0 | 0 | 0 | 0 | 236 | 236 | 0 | 0 | 0 | 0 |
| NC_000003.10 | Chr3 | 40 | 39 | 0 | 0 | 0 | 1 | 126 | 125 | 0 | 0 | 0 | 1 |
| NC_000004.10 | Chr4 | 52 | 50 | 0 | 0 | 0 | 2 | 219 | 217 | 0 | 0 | 0 | 2 |
| NC_000005.8 | Chr5 | 25 | 23 | 0 | 1 | 0 | 1 | 96 | 88 | 0 | 4 | 0 | 4 |
| NC_000006.10 | Chr6 | 39 | 35 | 0 | 1 | 0 | 3 | 136 | 125 | 0 | 1 | 0 | 10 |
| NC_000007.12 | Chr7 | 40 | 39 | 0 | 0 | 0 | 1 | 142 | 141 | 0 | 0 | 0 | 1 |
| NC_000008.9 | Chr8 | 60 | 57 | 2 | 1 | 0 | 0 | 224 | 220 | 3 | 1 | 0 | 0 |
| NC_000009.10 | Chr9 | 33 | 33 | 0 | 0 | 0 | 0 | 70 | 70 | 0 | 0 | 0 | 0 |
| NC_000010.9 | Chr10 | 28 | 25 | 0 | 2 | 0 | 1 | 130 | 102 | 0 | 4 | 0 | 24 |
| NC_000011.8 | Chr11 | 33 | 32 | 0 | 0 | 0 | 1 | 129 | 125 | 0 | 0 | 0 | 4 |
| NC_000012.10 | Chr12 | 37 | 36 | 0 | 0 | 0 | 1 | 95 | 93 | 0 | 0 | 0 | 2 |
| NC_000013.9 | Chr13 | 24 | 24 | 0 | 0 | 0 | 0 | 57 | 57 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 28 | 25 | 0 | 0 | 0 | 3 | 60 | 55 | 0 | 0 | 0 | 5 |
| NC_000015.8 | Chr15 | 29 | 26 | 2 | 1 | 0 | 0 | 79 | 70 | 6 | 1 | 2 | 0 |
| NC_000016.8 | Chr16 | 19 | 19 | 0 | 0 | 0 | 0 | 82 | 82 | 0 | 0 | 0 | 0 |
| NC_000017.9 | Chr17 | 12 | 9 | 1 | 1 | 0 | 1 | 57 | 33 | 8 | 1 | 0 | 15 |
| NC_000018.8 | Chr18 | 20 | 19 | 0 | 0 | 0 | 1 | 60 | 58 | 0 | 0 | 0 | 2 |
| NC_000019.8 | Chr19 | 17 | 13 | 0 | 0 | 0 | 4 | 34 | 25 | 0 | 0 | 0 | 9 |
| NC_000020.9 | Chr20 | 13 | 13 | 0 | 0 | 0 | 0 | 35 | 35 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 7 | 7 | 0 | 0 | 0 | 0 | 35 | 35 | 0 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 14 | 14 | 0 | 0 | 0 | 0 | 30 | 30 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 56 | 51 | 2 | 1 | 0 | 2 | 181 | 166 | 12 | 1 | 0 | 2 |
| NC_000002.10 | Chr2 | 73 | 69 | 2 | 1 | 0 | 1 | 236 | 227 | 5 | 3 | 0 | 1 |
| NC_000003.10 | Chr3 | 40 | 38 | 0 | 0 | 0 | 2 | 126 | 119 | 0 | 0 | 0 | 7 |
| NC_000004.10 | Chr4 | 52 | 48 | 1 | 0 | 0 | 3 | 219 | 207 | 2 | 0 | 0 | 10 |
| NC_000005.8 | Chr5 | 25 | 23 | 1 | 1 | 0 | 0 | 96 | 89 | 3 | 4 | 0 | 0 |
| NC_000006.10 | Chr6 | 39 | 34 | 0 | 1 | 0 | 4 | 136 | 124 | 0 | 1 | 0 | 11 |
| NC_000007.12 | Chr7 | 40 | 34 | 3 | 0 | 0 | 3 | 142 | 127 | 3 | 0 | 0 | 12 |
| NC_000008.9 | Chr8 | 60 | 55 | 2 | 1 | 0 | 2 | 224 | 218 | 3 | 1 | 0 | 2 |
| NC_000009.10 | Chr9 | 33 | 33 | 0 | 0 | 0 | 0 | 70 | 70 | 0 | 0 | 0 | 0 |
| NC_000010.9 | Chr10 | 28 | 24 | 2 | 1 | 1 | 0 | 130 | 124 | 2 | 2 | 2 | 0 |
| NC_000011.8 | Chr11 | 33 | 30 | 1 | 0 | 0 | 2 | 129 | 113 | 11 | 0 | 0 | 5 |
| NC_000012.10 | Chr12 | 37 | 33 | 0 | 0 | 0 | 4 | 95 | 84 | 0 | 0 | 0 | 11 |
| NC_000013.9 | Chr13 | 24 | 24 | 0 | 0 | 0 | 0 | 57 | 57 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 28 | 20 | 2 | 1 | 0 | 5 | 60 | 45 | 6 | 1 | 0 | 8 |
| NC_000015.8 | Chr15 | 29 | 23 | 1 | 1 | 0 | 4 | 79 | 67 | 1 | 2 | 0 | 9 |
| NC_000016.8 | Chr16 | 19 | 14 | 0 | 0 | 0 | 5 | 82 | 66 | 0 | 0 | 0 | 16 |
| NC_000017.9 | Chr17 | 12 | 8 | 1 | 0 | 0 | 3 | 57 | 32 | 2 | 2 | 0 | 21 |
| NC_000018.8 | Chr18 | 20 | 18 | 1 | 0 | 0 | 1 | 60 | 57 | 1 | 0 | 0 | 2 |
| NC_000019.8 | Chr19 | 17 | 12 | 2 | 0 | 0 | 3 | 34 | 27 | 2 | 0 | 0 | 5 |
| NC_000020.9 | Chr20 | 13 | 13 | 0 | 0 | 0 | 0 | 35 | 35 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 7 | 7 | 0 | 0 | 0 | 0 | 35 | 35 | 0 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 14 | 7 | 3 | 0 | 0 | 4 | 30 | 19 | 4 | 0 | 0 | 7 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- HapMap YRI
- Sampleset Type:
- Control
- Description:
- Yoruba Nigerian family trios from the International HapMap Project. 30 adult-and-both-parents trios from Ibadan, Nigeria (YRI).
- Size:
- 90
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Healthy individuals
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| NA18862 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18862 | Male | Yoruba | Healthy individuals |
| NA19161 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19161 | Male | Yoruba | Healthy individuals |
| NA18870 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18870 | Female | Yoruba | Healthy individuals |
| NA18502 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18502 | Female | Yoruba | Healthy individuals |
| NA19145 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19145 | Male | Yoruba | Healthy individuals |
| NA19142 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19142 | Male | Yoruba | Healthy individuals |
| NA18912 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18912 | Female | Yoruba | Healthy individuals |
| NA18863 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18863 | Male | Yoruba | Healthy individuals |
| NA19137 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19137 | Female | Yoruba | Healthy individuals |
| NA18859 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18859 | Male | Yoruba | Healthy individuals |
| NA19094 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19094 | Female | Yoruba | Healthy individuals |
| NA18913 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18913 | Male | Yoruba | Healthy individuals |
| NA18852 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18852 | Female | Yoruba | Healthy individuals |
| NA19116 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19116 | Female | Yoruba | Healthy individuals |
| NA19206 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19206 | Female | Yoruba | Healthy individuals |
| NA19138 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19138 | Male | Yoruba | Healthy individuals |
| NA19098 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19098 | Male | Yoruba | Healthy individuals |
| NA18858 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18858 | Female | Yoruba | Healthy individuals |
| NA19240 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19240 | Female | Yoruba | Healthy individuals |
| NA19092 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19092 | Male | Yoruba | Healthy individuals |
| NA19207 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19207 | Male | Yoruba | Healthy individuals |
| NA19099 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19099 | Female | Yoruba | Healthy individuals |
| NA19210 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19210 | Male | Yoruba | Healthy individuals |
| NA19132 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19132 | Female | Yoruba | Healthy individuals |
| NA19119 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19119 | Male | Yoruba | Healthy individuals |
| NA19203 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19203 | Male | Yoruba | Healthy individuals |
| NA19103 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19103 | Male | Yoruba | Healthy individuals |
| NA18855 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18855 | Female | Yoruba | Healthy individuals |
| NA19211 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19211 | Male | Yoruba | Healthy individuals |
| NA18854 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18854 | Male | Yoruba | Healthy individuals |
| NA19159 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19159 | Female | Yoruba | Healthy individuals |
| NA19208 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19208 | Male | Yoruba | Healthy individuals |
| NA19127 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19127 | Female | Yoruba | Healthy individuals |
| NA18856 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18856 | Male | Yoruba | Healthy individuals |
| NA19222 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19222 | Female | Yoruba | Healthy individuals |
| NA18861 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18861 | Female | Yoruba | Healthy individuals |
| NA19209 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19209 | Female | Yoruba | Healthy individuals |
| NA19205 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19205 | Male | Yoruba | Healthy individuals |
| NA19171 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19171 | Male | Yoruba | Healthy individuals |
| NA19154 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19154 | Male | Yoruba | Healthy individuals |
| NA18853 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18853 | Male | Yoruba | Healthy individuals |
| NA19200 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19200 | Male | Yoruba | Healthy individuals |
| NA19144 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19144 | Male | Yoruba | Healthy individuals |
| NA18857 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18857 | Male | Yoruba | Healthy individuals |
| NA18860 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18860 | Male | Yoruba | Healthy individuals |
| NA18501 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18501 | Male | Yoruba | Healthy individuals |
| NA19201 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19201 | Female | Yoruba | Healthy individuals |
| NA19192 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19192 | Male | Yoruba | Healthy individuals |
| NA19221 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19221 | Female | Yoruba | Healthy individuals |
| NA18508 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18508 | Female | Yoruba | Healthy individuals |
| NA18505 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18505 | Female | Yoruba | Healthy individuals |
| NA19239 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19239 | Male | Yoruba | Healthy individuals |
| NA18500 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18500 | Male | Yoruba | Healthy individuals |
| NA19204 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19204 | Female | Yoruba | Healthy individuals |
| NA19141 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19141 | Male | Yoruba | Healthy individuals |
| NA19143 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19143 | Female | Yoruba | Healthy individuals |
| NA19140 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19140 | Female | Yoruba | Healthy individuals |
| NA18872 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18872 | Male | Yoruba | Healthy individuals |
| NA19193 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19193 | Female | Yoruba | Healthy individuals |
| NA19153 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19153 | Male | Yoruba | Healthy individuals |
| NA19172 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19172 | Female | Yoruba | Healthy individuals |
| NA19202 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19202 | Female | Yoruba | Healthy individuals |
| NA19152 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19152 | Female | Yoruba | Healthy individuals |
| NA19238 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19238 | Female | Yoruba | Healthy individuals |
| NA18914 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18914 | Male | Yoruba | Healthy individuals |
| NA19173 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19173 | Male | Yoruba | Healthy individuals |
| NA18506 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18506 | Male | Yoruba | Healthy individuals |
| NA19131 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19131 | Female | Yoruba | Healthy individuals |
| NA19102 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19102 | Female | Yoruba | Healthy individuals |
| NA18522 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18522 | Male | Yoruba | Healthy individuals |
| NA19093 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19093 | Female | Yoruba | Healthy individuals |
| NA19120 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19120 | Male | Yoruba | Healthy individuals |
| NA19160 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19160 | Male | Yoruba | Healthy individuals |
| NA19128 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19128 | Male | Yoruba | Healthy individuals |
| NA18523 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18523 | Female | Yoruba | Healthy individuals |
| NA18516 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18516 | Male | Yoruba | Healthy individuals |
| NA19223 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19223 | Male | Yoruba | Healthy individuals |
| NA19194 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19194 | Male | Yoruba | Healthy individuals |
| NA18503 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18503 | Male | Yoruba | Healthy individuals |
| NA18871 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18871 | Male | Yoruba | Healthy individuals |
| NA19139 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19139 | Male | Yoruba | Healthy individuals |
| NA18507 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18507 | Male | Yoruba | Healthy individuals |
| NA19101 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19101 | Male | Yoruba | Healthy individuals |
| NA19129 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19129 | Female | Yoruba | Healthy individuals |
| NA18521 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18521 | Male | Yoruba | Healthy individuals |
| NA19100 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19100 | Female | Yoruba | Healthy individuals |
| NA18517 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18517 | Female | Yoruba | Healthy individuals |
| NA18504 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18504 | Male | Yoruba | Healthy individuals |
| NA18515 | Lymphoblastoid cell line (published microarray signal intensity data) | NA18515 | Male | Yoruba | Healthy individuals |
| NA19130 | Lymphoblastoid cell line (published microarray signal intensity data) | NA19130 | Male | Yoruba | Healthy individuals |
- Sampleset ID:
- 2
- Name:
- EGCUT
- Sampleset Type:
- Control
- Description:
- Estonian families from population-based cohort from the Estonian Genome Center. 22 adult-and-both-parents trios; 8 family quartets, 2 family quintets, 1 family sextet and 1 family septet.
- Size:
- 109
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Healthy individuals with no reported severe developmental disorders.
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| C010017 | Whole blood | C010017 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010140 | Whole blood | C010140 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010120 | Whole blood | C010120 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010109 | Whole blood | C010109 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010074 | Whole blood | C010074 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010065 | Whole blood | C010065 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010043 | Whole blood | C010043 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010024 | Whole blood | C010024 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010128 | Whole blood | C010128 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010103 | Whole blood | C010103 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010004 | Whole blood | C010004 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010020 | Whole blood | C010020 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010118 | Whole blood | C010118 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010044 | Whole blood | C010044 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010079 | Whole blood | C010079 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010127 | Whole blood | C010127 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010076 | Whole blood | C010076 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010041 | Whole blood | C010041 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010008 | Whole blood | C010008 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010085 | Whole blood | C010085 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010082 | Whole blood | C010082 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010123 | Whole blood | C010123 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010100 | Whole blood | C010100 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010138 | Whole blood | C010138 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010073 | Whole blood | C010073 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010062 | Whole blood | C010062 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010047 | Whole blood | C010047 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010003 | Whole blood | C010003 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010021 | Whole blood | C010021 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010131 | Whole blood | C010131 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010042 | Whole blood | C010042 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010139 | Whole blood | C010139 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010037 | Whole blood | C010037 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010048 | Whole blood | C010048 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010094 | Whole blood | C010094 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010110 | Whole blood | C010110 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010039 | Whole blood | C010039 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010010 | Whole blood | C010010 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010012 | Whole blood | C010012 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010134 | Whole blood | C010134 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010045 | Whole blood | C010045 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010113 | Whole blood | C010113 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010075 | Whole blood | C010075 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010124 | Whole blood | C010124 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010019 | Whole blood | C010019 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010104 | Whole blood | C010104 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010093 | Whole blood | C010093 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010114 | Whole blood | C010114 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010036 | Whole blood | C010036 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010022 | Whole blood | C010022 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010081 | Whole blood | C010081 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010023 | Whole blood | C010023 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010101 | Whole blood | C010101 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010001 | Whole blood | C010001 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010095 | Whole blood | C010095 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010026 | Whole blood | C010026 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010119 | Whole blood | C010119 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010077 | Whole blood | C010077 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010069 | Whole blood | C010069 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010102 | Whole blood | C010102 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010038 | Whole blood | C010038 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010018 | Whole blood | C010018 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010080 | Whole blood | C010080 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010087 | Whole blood | C010087 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010084 | Whole blood | C010084 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010046 | Whole blood | C010046 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010122 | Whole blood | C010122 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010116 | Whole blood | C010116 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010064 | Whole blood | C010064 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010052 | Whole blood | C010052 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010009 | Whole blood | C010009 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010115 | Whole blood | C010115 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010053 | Whole blood | C010053 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010054 | Whole blood | C010054 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010083 | Whole blood | C010083 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010132 | Whole blood | C010132 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010014 | Whole blood | C010014 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010121 | Whole blood | C010121 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010068 | Whole blood | C010068 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010049 | Whole blood | C010049 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010133 | Whole blood | C010133 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010111 | Whole blood | C010111 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010086 | Whole blood | C010086 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010078 | Whole blood | C010078 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010025 | Whole blood | C010025 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010129 | Whole blood | C010129 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010066 | Whole blood | C010066 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010040 | Whole blood | C010040 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010050 | Whole blood | C010050 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010055 | Whole blood | C010055 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010015 | Whole blood | C010015 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010130 | Whole blood | C010130 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010135 | Whole blood | C010135 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010117 | Whole blood | C010117 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010063 | Whole blood | C010063 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010067 | Whole blood | C010067 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010125 | Whole blood | C010125 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010002 | Whole blood | C010002 | Female | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010051 | Whole blood | C010051 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
| C010016 | Whole blood | C010016 | Male | Estonia | Healthy individuals with no reported severe developmental disorders. |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | SNP array | Probe signal intensity | Illumina Human1M-Duov3 DNA Analysis BeadChip (Human1M-Duov3_B), Illumina Infinium Human1M-Duo DNA Analysis BeadChip (Illumina 1M) | GEO | 2,067 |
| 2 | Discovery | SNP array | Probe signal intensity | Illumina Infinium Human370CNV-Quad DNA Analysis BeadChip (Illumina 370K) | 246 |