estd59 (1000 Genomes Consortium Pilot Project)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Richard Durbin
- Submitter URL:
- http://www.1000genomes.org/
- Description:
- This study contains all structural variation data for the first phase of the 1000 Genomes Project (1K Genomes, 1KG). This includes Deletions, Mobile Element Insertions, Tandem Duplications, and Novel Sequences for both Pilot1 and Pilot2 on all chromosomes. Pilot1 structural variations were determined by low coverage re-sequencing of HapMap samples. Pilot2 structural variations were determined by high coverage re-sequencing of two HapMap trios (YRI and CEU). See Variant Summary counts for estd59 in dbVar Variant Summary.
- Project:
- PRJNA28889
- Publication(s):
- 1000 Genomes Project Consortium et al. 2010
Detailed Information: Download 228871 Variant Regions, Download 2158011 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 16,838 | 159,864 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 17,246 | 165,220 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 13,323 | 125,486 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 15,262 | 158,735 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 13,268 | 133,313 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 13,801 | 140,631 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 13,391 | 123,910 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 11,464 | 114,278 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 11,695 | 104,025 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 10,048 | 101,038 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 10,664 | 101,723 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 9,975 | 94,788 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 7,817 | 80,807 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 7,452 | 80,950 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 5,916 | 57,941 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 7,503 | 59,938 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 7,567 | 66,996 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 6,478 | 61,927 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 6,955 | 53,803 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 4,943 | 45,067 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 3,656 | 28,895 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 4,598 | 43,080 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 6,477 | 34,253 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 907 | 1,522 | Remapped | NC_000024.10 |
| NT_187500.1 | Unplaced|NT_187500.1 | 1 | 1 | Remapped | NT_187500.1 |
| NT_187513.1 | Unplaced|NT_187513.1 | 21 | 47 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 32 | 65 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 1 | Remapped | NT_187364.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 3 | 3 | Remapped | NT_187367.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 4 | 20 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 73 | 342 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 65 | 315 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 11 | 90 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 42 | 229 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 40 | 340 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 1 | 1 | Remapped | NT_187520.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 17 | 282 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 42 | 229 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 4 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 22 | 190 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 46 | 241 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 10 | 26 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 4 | 22 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 41 | 231 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 37 | 542 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 30 | 193 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 13 | 119 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 26 | 60 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 10 | 10 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 15 | 285 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 48 | 465 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 10 | 18 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 45 | 861 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 26 | 90 | Remapped | NW_018654708.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 9 | 28 | Remapped | NW_019805487.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 13 | 301 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 33 | 172 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 5 | 39 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 28 | 157 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 14 | 99 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 60 | 515 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 15 | 148 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 109 | 920 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 9 | 123 | Remapped | NT_187530.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 1 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 33 | 172 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 18 | 345 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 12 | 50 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 2 | 2 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 4 | 3 | Remapped | NW_003571033.2 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 30 | 179 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 13 | 56 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 255 | 8,799 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 30 | 79 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 4 | 5 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 13 | 239 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 94 | 277 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 80 | 230 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 82 | 300 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 83 | 232 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 80 | 230 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 92 | 326 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 8 | 13 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 12 | 68 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 14 | 21 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 16 | 39 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 19 | 164 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 5 | 20 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 36 | 232 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 78 | 229 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 5 | 6 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 6 | 18 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 20 | 172 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 29 | 416 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 21 | 265 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 16 | 74 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 14 | 36 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 6 | 146 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 5 | 105 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 16 | 128 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 7 | 8 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 197 | 2,164 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 81 | 143 | Remapped | NT_113793.3 |
| NT_167250.2 | Chr4|NT_167250.2 | 40 | 766 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 18 | 212 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 7 | 11 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 16 | 210 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 100 | 968 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 22 | 308 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 36 | 305 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 105 | 1,004 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 1 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 69 | 1,491 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 13 | 40 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 21 | 262 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 14 | 81 | Remapped | NW_013171801.1 |
| NW_015495301.1 | Chr4|NW_015495301.1 | 1 | 1 | Remapped | NW_015495301.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 18 | 81 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 24 | 190 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 49 | 212 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 116 | 1,088 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 17 | 329 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 48 | 483 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 3 | 8 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 136 | 1,721 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 31 | 211 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 39 | 354 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 4 | 4 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 3 | 2 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 10 | 29 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 24 | 488 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 26 | 423 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 47 | 637 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 7 | 80 | Remapped | NW_018654712.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 4 | 10 | Remapped | NT_187692.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 464 | 4,607 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 358 | 3,158 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 1 | 1 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 396 | 3,915 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 291 | 2,479 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 4 | 36 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 72 | 719 | Remapped | NT_167244.2 |
| NT_187552.1 | Chr6|NT_187552.1 | 50 | 413 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 51 | 256 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 8 | 70 | Remapped | NT_187554.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 23 | 392 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 33 | 267 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 13 | 17 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 7 | 54 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 37 | 465 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 54 | 924 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 32 | 453 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 8 | 74 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 3 | 6 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 10 | 83 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 45 | 585 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 17 | 143 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 125 | 720 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 3 | 3 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 171 | 2,092 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 43 | 268 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 31 | 180 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 59 | 663 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 8 | 15 | Remapped | NW_003315922.2 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 30 | 484 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 9 | 152 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 12 | 142 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 66 | 685 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 83 | 367 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 3 | 3 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 46 | 388 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 86 | 714 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 28 | 181 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 25 | 296 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 83 | 707 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 9 | 187 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 201 | 2,791 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 47 | 587 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 20 | 93 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 17 | 44 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 40 | 193 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 2 | 21 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 239 | 1,964 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 47 | 305 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 62 | 830 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 53 | 296 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 4 | 4 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 23 | 77 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 32 | 278 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 878 | 8,012 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 2 | 2 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 19 | 185 | Remapped | NT_187578.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 2 | 5 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 16 | 80 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 3 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 48 | 531 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 6 | 110 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 17 | 231 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 47 | 200 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 5 | 11 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 22 | 327 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 14 | 71 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 14 | 42 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 42 | 579 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 19 | 48 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 58 | 304 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 22 | 100 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 29 | 234 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 46 | 728 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 7 | 32 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 38 | 344 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 48 | 638 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 35 | 185 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 75 | 510 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 6 | 128 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 4 | 21 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 8 | 35 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 4 | 57 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 38 | 344 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 6 | 9 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 66 | 316 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 11 | 129 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 38 | 100 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 32 | 490 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 2 | 50 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 78 | 818 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 26 | 230 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 2 | 2 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 9 | 38 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 9 | 31 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 14 | 107 | Remapped | NT_187591.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 3 | 52 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 11 | 370 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 40 | 452 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 19 | 147 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 4 | 3 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 27 | 141 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 82 | 1,239 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 9 | 67 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 55 | 285 | Remapped | NW_011332696.1 |
| NW_011332697.1 | Chr12|NW_011332697.1 | 9 | 43 | Remapped | NW_011332697.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 38 | 674 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 44 | 345 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 79 | 387 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 5 | 77 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 18 | 438 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 32 | 496 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 72 | 392 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 6 | 6 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 39 | 422 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 11 | 159 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 1 | 4 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 3 | 4 | Remapped | NT_187597.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 5 | 17 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 121 | 1,062 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 14 | 55 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 23 | 127 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 7 | 75 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 22 | 444 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 40 | 85 | Remapped | NT_113796.3 |
| NT_187598.1 | Chr14|NT_187598.1 | 16 | 286 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 28 | 135 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 942 | 20,496 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 90 | 560 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 16 | 20 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 71 | 565 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 16 | 140 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 212 | 1,850 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 1 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 2 | 2 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 22 | 183 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 75 | 195 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 29 | 159 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 69 | 662 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 29 | 210 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 19 | 105 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 218 | 1,871 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 9 | 19 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 124 | 1,111 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 16 | 105 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 5 | 13 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 19 | 361 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 12 | 67 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 6 | 13 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 7 | 99 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 5 | 68 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 16 | 36 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 50 | 195 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 4 | 4 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 38 | 270 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 275 | 3,081 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 124 | 1,180 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 211 | 2,173 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 37 | 253 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 40 | 344 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 136 | 1,579 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 1 | 1 | Remapped | NT_187384.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 34 | 388 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 92 | 556 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 68 | 353 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 450 | 5,486 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 18 | 177 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 6 | 19 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 158 | 1,387 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 26 | 189 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 24 | 297 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 38 | 502 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 4 | 4 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 13 | 70 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 12 | 100 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 36 | 221 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 13 | 29 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 69 | 704 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 6 | 19 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 64 | 534 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 39 | 236 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 54 | 268 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 7 | 7 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 28 | 194 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 2 | 2 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 48 | 321 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 18 | 225 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 4 | 7 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 42 | 251 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 34 | 208 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 8 | 7 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 6 | 12 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 27 | 373 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 235 | 2,626 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 87 | 753 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 54 | 333 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 54 | 333 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 54 | 333 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 124 | 639 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 54 | 333 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 74 | 572 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 49 | 68 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 18 | 46 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 17 | 172 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 31 | 306 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 45 | 211 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 8 | 8 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 24 | 123 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 8 | 66 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 127 | 846 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 28 | 276 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 33 | 367 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 60 | 1,192 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 53 | 358 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 10 | 78 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 11 | 56 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 43 | 426 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 8 | 23 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 24 | 409 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 6 | 8 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 24 | 401 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 4 | 6 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 4 | 19 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 33 | 233 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 24 | 214 | Remapped | NW_015148969.1 |
| NT_187387.1 | Chr22|NT_187387.1 | 1 | 35 | Remapped | NT_187387.1 |
| NT_187393.1 | Chr22|NT_187393.1 | 1 | 1 | Remapped | NT_187393.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 170 | 3,083 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 10 | 23 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 3 | 14 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 31 | 234 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 159 | 2,823 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 17 | 210 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 125 | 449 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 30 | 417 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 127 | 469 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 7 | 91 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 39 | 81 | Remapped | NW_009646209.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 1 | 1 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 17,119 | 160,945 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 17,262 | 165,447 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 13,322 | 125,485 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 15,218 | 158,692 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 13,267 | 133,306 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 13,810 | 140,719 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 13,432 | 124,356 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 11,537 | 114,992 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 11,744 | 104,192 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 10,086 | 101,819 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 10,687 | 102,291 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 9,971 | 94,892 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 7,823 | 80,832 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 7,517 | 82,809 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 5,952 | 58,173 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 7,514 | 59,448 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 7,424 | 66,993 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 6,488 | 61,940 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 6,948 | 54,336 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 4,943 | 45,076 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 3,660 | 29,048 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 4,720 | 45,055 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 6,544 | 35,164 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 910 | 1,519 | Remapped | NC_000024.9 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 22 | 183 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 16 | 26 | Remapped | NW_003315904.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 4 | Remapped | NW_003315906.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 22 | 190 | Remapped | NW_003315907.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 12 | 99 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 338 | 3,928 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 104 | 1,291 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 35 | 270 | Remapped | NW_003871057.1 |
| NW_004070863.1 | Chr1|NW_004070863.1 | 1 | 1 | Remapped | NW_004070863.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 6 | 83 | Remapped | NW_004070864.2 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 12 | 50 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 2 | 2 | Remapped | NW_003315909.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 10 | 10 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 23 | 25 | Remapped | NW_003571032.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 4 | 3 | Remapped | NW_003571033.2 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 36 | 202 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 12 | 133 | Remapped | NW_003315910.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 5 | 6 | Remapped | NW_003315913.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 30 | 178 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 7 | 36 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 6 | 18 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 11 | 31 | Remapped | NW_004775426.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 40 | 766 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 1 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 69 | 1,491 | Remapped | NW_003315915.1 |
| NW_003315916.1 | Chr4|NW_003315916.1 | 5 | 23 | Remapped | NW_003315916.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 86 | 247 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 16 | 48 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 72 | 622 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 40 | 698 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 4 | 4 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 3 | 2 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 10 | 29 | Remapped | NW_003571036.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 10 | 81 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 50 | 336 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 4 | 36 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 69 | 696 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 315 | 3,147 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 517 | 4,992 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 324 | 2,737 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 12 | 142 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 396 | 4,102 | Remapped | NT_167249.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 7 | 54 | Remapped | NW_003315921.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 17 | 24 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 70 | 526 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 37 | 467 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 23 | 94 | Remapped | NW_004504300.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 8 | 15 | Remapped | NW_003315922.2 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 36 | 185 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 48 | 629 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 31 | 206 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 185 | 2,121 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 16 | 75 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 227 | 1,688 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 14 | 20 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 43 | 71 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 66 | 489 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 40 | 355 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 158 | 1,164 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 2 | 2 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 4 | 4 | Remapped | NW_004775431.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 45 | 528 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 6 | 33 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 12 | 38 | Remapped | NW_003315927.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 2 | 5 | Remapped | NW_003315929.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 16 | 80 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 3 | Remapped | NW_003315931.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 24 | 31 | Remapped | NW_003871067.1 |
| NW_004070867.1 | Chr9|NW_004070867.1 | 3 | 11 | Remapped | NW_004070867.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 31 | 196 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 37 | 290 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 13 | 50 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 16 | 285 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 7 | 16 | Remapped | NW_003315933.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 18 | 323 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 14 | 71 | Remapped | NW_003315935.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 14 | 50 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 212 | 1,489 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 9 | 83 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 2 | 2 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 47 | 239 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 10 | 130 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 5 | 32 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 54 | 840 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 6 | 128 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 27 | 212 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 45 | 305 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 29 | 149 | Remapped | NW_003871072.2 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 4 | 21 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 9 | 36 | Remapped | NW_003871074.1 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 26 | 475 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 4 | 57 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 16 | 168 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 12 | 23 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 17 | 78 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 14 | 31 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 9 | 87 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 5 | 9 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 57 | 316 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 61 | 262 | Remapped | NW_003315937.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 3 | 52 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 11 | 370 | Remapped | NW_003315939.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 38 | 440 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 19 | 147 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 4 | 3 | Remapped | NW_003315942.2 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 25 | 153 | Remapped | NW_003571048.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 3 | 3 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 26 | 657 | Remapped | NW_003571050.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 20 | 52 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 16 | 172 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 2 | 24 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 1,041 | 21,487 | Remapped | NW_004166863.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 29 | 207 | Remapped | NW_003315943.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 19 | 105 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 19 | 421 | Remapped | NW_003871084.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 12 | 67 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 6 | 13 | Remapped | NW_003315946.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 103 | 952 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 12 | 22 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 43 | 273 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 286 | 3,664 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 89 | 629 | Remapped | NW_003315950.2 |
| NW_003315951.1 | Chr17|NW_003315951.1 | 4 | 3 | Remapped | NW_003315951.1 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 26 | 189 | Remapped | NW_003315953.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 24 | 297 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 38 | 502 | Remapped | NW_003315955.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 11 | 109 | Remapped | NW_003571052.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 71 | 402 | Remapped | NW_003871086.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 36 | 467 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 29 | 294 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 33 | 237 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 32 | 353 | Remapped | NW_003871090.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 4 | 4 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 5 | 42 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 32 | 316 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 212 | 1,765 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 9 | 17 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 33 | 599 | Remapped | NW_004775433.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 28 | 194 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 3 | 5 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 48 | 321 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 18 | 225 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 5 | 8 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 36 | 224 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 45 | 211 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 8 | 8 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 25 | 124 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 8 | 66 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 116 | 1,286 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 7 | 78 | Remapped | NW_003571060.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 7 | 19 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 31 | 242 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 137 | 1,665 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 64 | 418 | Remapped | NW_004775434.1 |
| NW_003315966.1 | Chr20|NW_003315966.1 | 11 | 56 | Remapped | NW_003315966.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 30 | 294 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 1 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 28 | 321 | Remapped | NW_004504304.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 6 | 8 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 24 | 401 | Remapped | NW_003315968.1 |
| NW_003315969.1 | Chr21|NW_003315969.1 | 4 | 6 | Remapped | NW_003315969.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 4 | 19 | Remapped | NW_003315970.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 49 | 196 | Remapped | NW_004775435.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 3 | 9 | Remapped | NW_003315971.2 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 17 | 210 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 26 | 149 | Remapped | NW_003871096.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 14 | 76 | Remapped | NW_004070873.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 18 | 141 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 16 | 39 | Remapped | NW_004070875.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 106 | 959 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 33 | 205 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 5 | 5 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 56 | 111 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 34 | 67 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 1 | 1 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 188 | 573 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 114 | 276 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 28 | 123 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 7 | 8 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 120 | 463 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 20 | 70 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 15 | 32 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 6 | 22 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 2 | 2 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 10 | 13 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 19 | 65 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 55 | 475 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 45 | 230 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 83 | 343 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 332 | 2,642 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 33 | 87 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 29 | 59 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 4 | 6 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 22 | 31 | Remapped | NW_004166866.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 17,147 | 161,115 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 17,279 | 165,548 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 13,324 | 125,494 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 15,321 | 160,160 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 13,270 | 133,329 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 13,817 | 140,768 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 13,511 | 125,559 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 11,574 | 115,335 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 11,754 | 104,272 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 10,114 | 102,336 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 10,697 | 102,351 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 9,997 | 95,046 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 7,823 | 80,832 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 7,526 | 82,909 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 5,967 | 58,222 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 7,515 | 59,463 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 7,856 | 71,362 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 6,488 | 61,940 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 7,091 | 56,061 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 4,944 | 45,084 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 3,660 | 29,048 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 4,731 | 45,050 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 6,554 | 35,200 | Submitted | NC_000023.9 |
| NC_000024.8 | ChrY | 911 | 1,527 | Submitted | NC_000024.8 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 17,147 | 16,578 | 28 | 20 | 20 | 501 | 161,115 | 154,944 | 42 | 32 | 160 | 5,937 |
| NC_000002.10 | Chr2 | 17,279 | 17,125 | 14 | 43 | 17 | 80 | 165,548 | 164,636 | 105 | 361 | 101 | 345 |
| NC_000003.10 | Chr3 | 13,324 | 13,198 | 36 | 14 | 2 | 74 | 125,494 | 124,868 | 185 | 27 | 9 | 405 |
| NC_000004.10 | Chr4 | 15,321 | 14,986 | 47 | 22 | 42 | 224 | 160,160 | 155,953 | 461 | 96 | 962 | 2,688 |
| NC_000005.8 | Chr5 | 13,270 | 13,089 | 25 | 36 | 3 | 117 | 133,329 | 131,925 | 28 | 203 | 23 | 1,150 |
| NC_000006.10 | Chr6 | 13,817 | 12,829 | 15 | 6 | 7 | 960 | 140,768 | 131,086 | 46 | 24 | 49 | 9,563 |
| NC_000007.12 | Chr7 | 13,511 | 12,758 | 88 | 69 | 25 | 571 | 125,559 | 120,243 | 582 | 207 | 345 | 4,182 |
| NC_000008.9 | Chr8 | 11,574 | 11,244 | 36 | 30 | 15 | 249 | 115,335 | 112,796 | 77 | 270 | 260 | 1,932 |
| NC_000009.10 | Chr9 | 11,754 | 11,458 | 21 | 35 | 10 | 230 | 104,272 | 102,536 | 229 | 108 | 80 | 1,319 |
| NC_000010.9 | Chr10 | 10,114 | 9,617 | 29 | 39 | 28 | 401 | 102,336 | 98,033 | 80 | 160 | 517 | 3,546 |
| NC_000011.8 | Chr11 | 10,697 | 10,401 | 3 | 15 | 3 | 275 | 102,351 | 100,178 | 10 | 88 | 19 | 2,056 |
| NC_000012.10 | Chr12 | 9,997 | 9,784 | 1 | 11 | 2 | 199 | 95,046 | 92,702 | 8 | 150 | 16 | 2,170 |
| NC_000013.9 | Chr13 | 7,823 | 7,820 | 1 | 0 | 0 | 2 | 80,832 | 80,804 | 4 | 0 | 0 | 24 |
| NC_000014.7 | Chr14 | 7,526 | 6,434 | 22 | 7 | 3 | 1,060 | 82,909 | 61,124 | 125 | 82 | 17 | 21,561 |
| NC_000015.8 | Chr15 | 5,967 | 5,819 | 39 | 27 | 13 | 69 | 58,222 | 57,136 | 177 | 141 | 40 | 728 |
| NC_000016.8 | Chr16 | 7,515 | 7,475 | 0 | 6 | 2 | 32 | 59,463 | 59,338 | 0 | 5 | 16 | 104 |
| NC_000017.9 | Chr17 | 7,856 | 6,907 | 153 | 75 | 33 | 688 | 71,362 | 62,382 | 1,328 | 477 | 338 | 6,837 |
| NC_000018.8 | Chr18 | 6,488 | 6,335 | 2 | 3 | 0 | 148 | 61,940 | 60,942 | 2 | 2 | 0 | 994 |
| NC_000019.8 | Chr19 | 7,091 | 6,724 | 49 | 12 | 1 | 305 | 56,061 | 53,359 | 152 | 143 | 8 | 2,399 |
| NC_000020.9 | Chr20 | 4,944 | 4,848 | 9 | 2 | 1 | 84 | 45,084 | 44,222 | 20 | 2 | 8 | 832 |
| NC_000021.7 | Chr21 | 3,660 | 3,567 | 5 | 1 | 0 | 87 | 29,048 | 28,412 | 5 | 1 | 0 | 630 |
| NC_000022.9 | Chr22 | 4,731 | 4,635 | 3 | 9 | 13 | 71 | 45,050 | 44,462 | 3 | 9 | 52 | 524 |
| NC_000023.9 | ChrX | 6,554 | 5,157 | 10 | 20 | 5 | 1,362 | 35,200 | 28,222 | 10 | 108 | 14 | 6,846 |
| NC_000024.8 | ChrY | 911 | 898 | 10 | 2 | 1 | 0 | 1,527 | 1,505 | 11 | 3 | 8 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 17,147 | 16,013 | 327 | 90 | 104 | 613 | 161,115 | 152,803 | 2,343 | 512 | 698 | 4,759 |
| NC_000002.10 | Chr2 | 17,279 | 16,412 | 121 | 54 | 38 | 654 | 165,548 | 151,825 | 1,092 | 419 | 346 | 11,866 |
| NC_000003.10 | Chr3 | 13,324 | 12,882 | 61 | 21 | 1 | 359 | 125,494 | 122,308 | 559 | 331 | 8 | 2,288 |
| NC_000004.10 | Chr4 | 15,321 | 14,665 | 98 | 23 | 42 | 493 | 160,160 | 152,281 | 830 | 152 | 962 | 5,935 |
| NC_000005.8 | Chr5 | 13,270 | 12,680 | 32 | 37 | 2 | 519 | 133,329 | 127,612 | 46 | 210 | 16 | 5,445 |
| NC_000006.10 | Chr6 | 13,817 | 12,606 | 62 | 26 | 16 | 1,107 | 140,768 | 128,937 | 304 | 112 | 137 | 11,278 |
| NC_000007.12 | Chr7 | 13,511 | 12,541 | 196 | 112 | 59 | 603 | 125,559 | 118,261 | 988 | 465 | 790 | 5,055 |
| NC_000008.9 | Chr8 | 11,574 | 9,760 | 52 | 52 | 31 | 1,679 | 115,335 | 98,561 | 209 | 619 | 301 | 15,645 |
| NC_000009.10 | Chr9 | 11,754 | 11,289 | 218 | 89 | 35 | 123 | 104,272 | 101,015 | 1,691 | 222 | 180 | 1,164 |
| NC_000010.9 | Chr10 | 10,114 | 9,726 | 103 | 56 | 66 | 163 | 102,336 | 98,988 | 575 | 197 | 1,298 | 1,278 |
| NC_000011.8 | Chr11 | 10,697 | 10,160 | 45 | 20 | 29 | 443 | 102,351 | 97,376 | 360 | 118 | 647 | 3,850 |
| NC_000012.10 | Chr12 | 9,997 | 9,404 | 5 | 6 | 22 | 560 | 95,046 | 88,718 | 19 | 182 | 258 | 5,869 |
| NC_000013.9 | Chr13 | 7,823 | 7,521 | 4 | 0 | 0 | 298 | 80,832 | 78,091 | 62 | 0 | 0 | 2,679 |
| NC_000014.7 | Chr14 | 7,526 | 6,057 | 182 | 69 | 59 | 1,159 | 82,909 | 57,187 | 1,715 | 577 | 1,377 | 22,053 |
| NC_000015.8 | Chr15 | 5,967 | 5,496 | 39 | 22 | 9 | 401 | 58,222 | 54,838 | 302 | 72 | 39 | 2,971 |
| NC_000016.8 | Chr16 | 7,515 | 7,126 | 24 | 44 | 17 | 304 | 59,463 | 56,804 | 80 | 135 | 90 | 2,354 |
| NC_000017.9 | Chr17 | 7,856 | 6,335 | 203 | 62 | 35 | 1,221 | 71,362 | 57,831 | 1,852 | 367 | 470 | 10,842 |
| NC_000018.8 | Chr18 | 6,488 | 6,164 | 12 | 2 | 10 | 300 | 61,940 | 59,816 | 13 | 2 | 13 | 2,096 |
| NC_000019.8 | Chr19 | 7,091 | 6,554 | 93 | 19 | 27 | 398 | 56,061 | 52,498 | 489 | 163 | 343 | 2,568 |
| NC_000020.9 | Chr20 | 4,944 | 4,774 | 25 | 7 | 4 | 134 | 45,084 | 43,284 | 44 | 53 | 19 | 1,684 |
| NC_000021.7 | Chr21 | 3,660 | 3,506 | 15 | 8 | 5 | 126 | 29,048 | 27,487 | 30 | 31 | 154 | 1,346 |
| NC_000022.9 | Chr22 | 4,731 | 4,113 | 146 | 45 | 63 | 364 | 45,050 | 36,808 | 1,379 | 291 | 863 | 5,709 |
| NC_000023.9 | ChrX | 6,554 | 5,949 | 287 | 77 | 77 | 164 | 35,200 | 32,146 | 842 | 288 | 947 | 977 |
| NC_000024.8 | ChrY | 911 | 863 | 12 | 1 | 4 | 31 | 1,527 | 1,438 | 14 | 8 | 5 | 62 |
Samplesets
Number of Samplesets: 1
- Name:
- Individual samples
- Size:
- 185
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| SAMN00110481 | B-Lymphocyte | NA12762 | Male | Caucasian | Not reported | |
| SAMN00001577 | B-Lymphocyte | NA18489 | Female | Not reported | ||
| SAMN00801704 | B-Lymphocyte | NA12761 | Female | Caucasian | Not reported | |
| SAMN00001576 | B-Lymphocyte | NA18486 | Male | Not reported | ||
| SAMN00001534 | B-Lymphocyte | NA11931 | Female | Caucasian | 78 Years | Not reported |
| SAMN00001593 | B-Lymphocyte | NA18526 | Female | Not reported | ||
| SAMN00001589 | B-Lymphocyte | NA18519 | Male | Not reported | ||
| SAMN00801684 | B-Lymphocyte | NA12751 | Female | Caucasian | Not reported | |
| SAMN00001585 | B-Lymphocyte | NA18510 | Male | Not reported | ||
| SAMN00138191 | B-Lymphocyte | NA12812 | Male | Caucasian | Not reported | |
| SAMN00001602 | B-Lymphocyte | NA18558 | Male | Not reported | ||
| SAMN00001569 | B-Lymphocyte | NA12828 | Female | Caucasian | Not reported | |
| SAMN00801241 | B-Lymphocyte | NA12156 | Female | Caucasian | 81 Years | Not reported |
| SAMN00801237 | B-Lymphocyte | NA12154 | Male | Caucasian | 92 Years | Not reported |
| SAMN00001610 | B-Lymphocyte | NA18572 | Male | Not reported | ||
| SAMN00801680 | B-Lymphocyte | NA12749 | Female | Caucasian | Not reported | |
| SAMN00801880 | B-Lymphocyte | NA12874 | Male | Caucasian | Not reported | |
| SAMN00800835 | B-Lymphocyte | NA11831 | Male | Caucasian | 73 Years | Not reported |
| SAMN00001599 | B-Lymphocyte | NA18550 | Female | Not reported | ||
| SAMN00797406 | B-Lymphocyte | NA07347 | Male | Caucasian | 86 Years | Not reported |
| SAMN00001583 | B-Lymphocyte | NA18505 | Female | Not reported | ||
| SAMN00801051 | B-Lymphocyte | NA12004 | Female | Caucasian | 92 Years | Not reported |
| SAMN00001591 | B-Lymphocyte | NA18522 | Male | Not reported | ||
| SAMN00801031 | B-Lymphocyte | NA11994 | Male | Caucasian | 80 Years | Not reported |
| SAMN00801317 | B-Lymphocyte | NA12249 | Female | Caucasian | 77 Years | Not reported |
| SAMN00001515 | B-Lymphocyte | NA06994 | Male | Caucasian | 68 Years | Not reported |
| SAMN00801708 | B-Lymphocyte | NA12763 | Female | Caucasian | Not reported | |
| SAMN00001594 | B-Lymphocyte | NA18532 | Female | Not reported | ||
| SAMN00001564 | B-Lymphocyte | NA12776 | Female | Caucasian | Not reported | |
| SAMN00800945 | B-Lymphocyte | NA11918 | Female | Caucasian | 64 Years | Not reported |
| SAMN00797025 | B-Lymphocyte | NA06986 | Male | Caucasian | 74 Years | Not reported |
| SAMN00001606 | B-Lymphocyte | NA18564 | Female | Not reported | ||
| SAMN00797419 | B-Lymphocyte | NA07357 | Male | Caucasian | 69 Years | Not reported |
| SAMN00001592 | B-Lymphocyte | NA18523 | Female | Not reported | ||
| SAMN00001605 | B-Lymphocyte | NA18563 | Male | Not reported | ||
| SAMN00001595 | B-Lymphocyte | NA18537 | Female | Not reported | ||
| SAMN00801103 | B-Lymphocyte | NA12045 | Male | Caucasian | 74 Years | Not reported |
| SAMN00800947 | B-Lymphocyte | NA11919 | Male | Caucasian | 67 Years | Not reported |
| SAMN00001611 | B-Lymphocyte | NA18573 | Female | Not reported | ||
| SAMN00001556 | B-Lymphocyte | NA12717 | Female | Caucasian | Not reported | |
| SAMN00001604 | B-Lymphocyte | NA18562 | Male | Not reported | ||
| SAMN00001560 | B-Lymphocyte | NA12760 | Male | Caucasian | Not reported | |
| SAMN00001588 | B-Lymphocyte | NA18517 | Female | Not reported | ||
| SAMN00001546 | B-Lymphocyte | NA12144 | Male | Caucasian | 71 Years | Not reported |
| SAMN00800837 | B-Lymphocyte | NA11832 | Female | Caucasian | 58 Years | Not reported |
| SAMN00797126 | B-Lymphocyte | NA07037 | Female | Caucasian | 65 Years | Not reported |
| SAMN00001590 | B-Lymphocyte | NA18520 | Female | Not reported | ||
| SAMN00801888 | B-Lymphocyte | NA12878 | Female | Caucasian | Not reported | |
| SAMN00797023 | B-Lymphocyte | NA06985 | Female | Caucasian | 69 Years | Not reported |
| SAMN00001544 | B-Lymphocyte | NA12044 | Female | Caucasian | 70 Years | Not reported |
| SAMN00001582 | B-Lymphocyte | NA18504 | Male | Not reported | ||
| SAMN00001548 | B-Lymphocyte | NA12155 | Male | Caucasian | 86 Years | Not reported |
| SAMN00001608 | B-Lymphocyte | NA18570 | Female | Not reported | ||
| SAMN00001609 | B-Lymphocyte | NA18571 | Female | Not reported | ||
| SAMN00800949 | B-Lymphocyte | NA11920 | Female | Caucasian | 66 Years | Not reported |
| SAMN00001578 | B-Lymphocyte | NA18498 | Male | Not reported | ||
| SAMN00801027 | B-Lymphocyte | NA11992 | Male | Caucasian | 86 Years | Not reported |
| SAMN00001552 | B-Lymphocyte | NA12287 | Female | Caucasian | 69 Years | Not reported |
| SAMN00800258 | B-Lymphocyte | NA10847 | Female | Caucasian | 38 Years | Not reported |
| SAMN00001525 | B-Lymphocyte | NA11830 | Female | Caucasian | 63 Years | Not reported |
| SAMN00801914 | B-Lymphocyte | NA12892 | Female | Caucasian | Not reported | |
| SAMN00001568 | B-Lymphocyte | NA12815 | Female | Caucasian | Not reported | |
| SAMN00001597 | B-Lymphocyte | NA18545 | Female | Not reported | ||
| SAMN00800831 | B-Lymphocyte | NA11829 | Male | Caucasian | 72 Years | Not reported |
| SAMN00801049 | B-Lymphocyte | NA12003 | Male | Caucasian | 97 Years | Not reported |
| SAMN00001579 | B-Lymphocyte | NA18499 | Female | Not reported | ||
| SAMN00001603 | B-Lymphocyte | NA18561 | Male | Not reported | ||
| SAMN00001596 | B-Lymphocyte | NA18542 | Female | Not reported | ||
| SAMN00797154 | B-Lymphocyte | NA07051 | Male | Caucasian | 67 Years | Not reported |
| SAMN00001586 | B-Lymphocyte | NA18511 | Female | Not reported | ||
| SAMN00001587 | B-Lymphocyte | NA18516 | Male | Not reported | ||
| SAMN00797054 | B-Lymphocyte | NA07000 | Female | Caucasian | 66 Years | Not reported |
| SAMN00001598 | B-Lymphocyte | NA18547 | Female | Not reported | ||
| SAMN00801099 | B-Lymphocyte | NA12043 | Male | Caucasian | 74 Years | Not reported |
| SAMN00001581 | B-Lymphocyte | NA18502 | Female | Not reported | ||
| SAMN00801646 | B-Lymphocyte | NA12716 | Male | Caucasian | Not reported | |
| SAMN00801055 | B-Lymphocyte | NA12006 | Female | Caucasian | 75 Years | Not reported |
| SAMN00801878 | B-Lymphocyte | NA12873 | Female | Caucasian | Not reported | |
| SAMN00004417 | B-Lymphocyte | NA18507 | Male | Not reported | ||
| SAMN00800266 | B-Lymphocyte | NA10851 | Male | Caucasian | 52 Years | Not reported |
| SAMN00801053 | B-Lymphocyte | NA12005 | Male | Caucasian | 77 Years | Not reported |
| SAMN00001600 | B-Lymphocyte | NA18552 | Female | Not reported | ||
| SAMN00801770 | B-Lymphocyte | NA12813 | Female | Caucasian | Not reported | |
| SAMN00001529 | B-Lymphocyte | NA11881 | Male | Caucasian | 62 Years | Not reported |
| SAMN00801912 | B-Lymphocyte | NA12891 | Male | Caucasian | Not reported | |
| SAMN00801029 | B-Lymphocyte | NA11993 | Female | Caucasian | 80 Years | Not reported |
| SAMN00801509 | B-Lymphocyte | NA12414 | Female | Caucasian | Not reported | |
| SAMN00001601 | B-Lymphocyte | NA18555 | Female | Not reported | ||
| SAMN00801772 | B-Lymphocyte | NA12814 | Male | Caucasian | Not reported | |
| SAMN00001538 | B-Lymphocyte | NA11995 | Female | Caucasian | 84 Years | Not reported |
| SAMN00001550 | B-Lymphocyte | NA12234 | Female | Caucasian | 74 Years | Not reported |
| SAMN00001584 | B-Lymphocyte | NA18508 | Female | Not reported | ||
| SAMN00797404 | B-Lymphocyte | NA07346 | Female | Caucasian | 85 Years | Not reported |
| SAMN00800852 | B-Lymphocyte | NA11840 | Female | Caucasian | 67 Years | Not reported |
| SAMN00801682 | B-Lymphocyte | NA12750 | Male | Caucasian | Not reported | |
| SAMN00001580 | B-Lymphocyte | NA18501 | Male | Not reported | ||
| SAMN00801876 | B-Lymphocyte | NA12872 | Male | Caucasian | Not reported | |
| SAMN00001607 | B-Lymphocyte | NA18566 | Female | Not reported | ||
| SAMN00001530 | B-Lymphocyte | NA11894 | Female | Caucasian | 69 Years | Not reported |
| SAMN00001554 | B-Lymphocyte | NA12489 | Female | Caucasian | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Site | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth | Illumina | Yale University | 30,713 |
| 2 | Discovery | Sequencing | de novo sequence assembly | 454 | Oxford University | 3,482 |
| 3 | Discovery | Sequencing | Split read mapping | 454 | Boston College | 1,688 |
| 4 | Discovery | Sequencing | de novo sequence assembly | Illumina | University of Washington | 657 |
| 5 | Discovery | Sequencing | Read depth | Illumina | University of Washington | 3,478 |
| 6 | Discovery | Sequencing | Split read mapping | Illumina | Wellcome Trust Sanger Institute | 10,682 |
| 7 | Discovery | Sequencing | Paired-end mapping | SOLiD | Applied Biosystems | 1,770 |
| 8 | Discovery | Sequencing | Paired-end mapping | Illumina | Washington University in St. Louis | 20,017 |
| 9 | Discovery | Sequencing | Paired-end mapping | Illumina | University of Washington | 21,056 |
| 10 | Discovery | Sequencing | de novo sequence assembly | Illumina | Beijing Genomics Institute | 1,041 |
| 11 | Discovery | Sequencing | Split read mapping | 454 | Yale University | 34,055 |
| 12 | Discovery | Sequencing | Read depth | Illumina | Cold Spring Harbor Laboratory | 16,346 |
| 13 | Discovery | Sequencing | Paired-end mapping | Illumina | Boston College | 21,615 |
| 14 | Discovery | Sequencing | Paired-end mapping | 454 | Yale University | 1,062 |
| 15 | Discovery | Sequencing | Paired-end mapping | Illumina | Wellcome Trust Sanger Institute | 9,632 |
| 21 | Discovery | Sequencing | Split read mapping | 454 | Yale University | 10,697 |
| 22 | Discovery | Sequencing | Read depth | Illumina | Albert Einstein College of Medicine | 87,720 |
| 23 | Discovery | Sequencing | Paired-end mapping | Illumina | Broad Institute | 288,526 |
| 24 | Discovery | Sequencing | Paired-end mapping | Illumina | Washington University in St. Louis | 138,122 |
| 25 | Discovery | Sequencing | Split read mapping | Illumina | Leiden University | 3,870 |
| 26 | Discovery | Sequencing | Split read mapping | Illumina | Leiden University | 122,808 |
| 27 | Discovery | Sequencing | Paired-end mapping | Illumina | Baylor College of Medicine | 72,846 |
| 28 | Discovery | Sequencing | Split read mapping | 454 | Baylor College of Medicine | 7,992 |
| 29 | Discovery | Sequencing | Paired-end mapping | Illumina | Wellcome Trust Sanger Institute | 216,282 |
| 30 | Discovery | Sequencing | Paired-end mapping | SOLiD | Yale University | 8,317 |
| 31 | Discovery | Sequencing | Read depth | Illumina | Yale University | 332,318 |
| 32 | Discovery | Sequencing | Read depth | Illumina | Cold Spring Harbor Laboratory | 435,607 |
| 33 | Discovery | Sequencing | Paired-end mapping | Illumina | Baylor College of Medicine | 156,006 |
| 129 | Discovery | Sequencing | Paired-end mapping | Illumina | 20,548 | |
| 130 | Discovery | Sequencing | Split read mapping | Roche 454 | 5,930 | |
| 131 | Discovery | Sequencing | Split read and paired-end mapping | Illumina, Roche 454 | 59,370 | |
| 133 | Discovery | Sequencing | Paired-end mapping | Illumina | 2,164 | |
| 134 | Discovery | Sequencing | Split read mapping | Roche 454 | 610 | |
| 135 | Discovery | Sequencing | Split read and paired-end mapping | Illumina, Roche 454 | 3,230 | |
| 137 | Discovery | Sequencing | Paired-end mapping | Illumina | 6,764 | |
| 139 | Discovery | Sequencing | Paired-end mapping | Illumina | 767 | |
| 141 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 41 | |
| 142 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 4 | |
| 143 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 23 | |
| 144 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 16 | |
| 145 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 4 | |
| 146 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 6 | |
| 147 | Discovery | Sequencing | Paired-end mapping | ABI SOLiD | 41 | |
| 148 | Discovery | Sequencing | Other | Illumina | 29 | |
| 149 | Discovery | Sequencing | de novo sequence assembly | Illumina, Roche 454 | 2 | |
| 150 | Discovery | Sequencing | de novo sequence assembly | Illumina | 54 | |
| 151 | Discovery | Sequencing | de novo sequence assembly | ABI SOLiD, Illumina | 3 | |
| 16 | Validation | PCR | Other | Not reported | LSU | 665 |
| 17 | Validation | PCR | Other | Not reported | Wellcome Trust Sanger Institute | 2,548 |
| 18 | Validation | Oligo aCGH | Probe signal intensity | Custom Nimblegen and Affymetix arrays | 24,231 | |
| 19 | Validation | Sequencing | de novo sequence assembly | Not reported | 52,820 | |
| 20 | Validation | Sequencing | Paired-end mapping | 454 GS Titanium | 7,920 | |
| 34 | Validation | PCR | Other | Not reported | LSU | 6,262 |
| 35 | Validation | PCR | Other | Not reported | Wellcome Trust Sanger Institute | 14,544 |
| 36 | Validation | Digital array | Other | Affymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays | 345,348 | |
| 37 | Validation | Sequencing | de novo sequence assembly | Not reported | 661,425 | |
| 38 | Validation | Digital array | Other | Affymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays | Cold Spring Harbor Laboratory | 383,403 |
Validations
| Experiment ID | Method | Analysis | Platform | Number of Variant Calls Validated |
|---|---|---|---|---|
| 16 | PCR | Other | Not reported | 665 |
| 17 | PCR | Other | Not reported | 2,548 |
| 18 | Oligo aCGH | Probe signal intensity | Custom Nimblegen and Affymetix arrays | 24,231 |
| 19 | Sequencing | de novo sequence assembly | Not reported | 52,820 |
| 20 | Sequencing | Paired-end mapping | 454 GS Titanium | 7,920 |
| 34 | PCR | Other | Not reported | 6,262 |
| 35 | PCR | Other | Not reported | 14,544 |
| 36 | Digital array | Other | Affymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays | 345,348 |
| 37 | Sequencing | de novo sequence assembly | Not reported | 661,425 |
| 38 | Digital array | Other | Affymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays | 383,403 |