nstd53 (Tuttelmann et al. 2011)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Frank Tüttelmann
- Description:
- Comparison of 89 infertile male patients with severe oligozoospermia (=5 x Mill./ml sperm concentration and =10 Mill. total sperm count) and 37 with azoospermia due to complete, bilateral Sertoli-cell-only syndrome (SCOS) with 100 healthy controls with normal semen parameters (=20 Mill./ml sperm concentration, =40 Mill. total sperm count, =2 ml semen volume, =50% of grade a+b or =25% grade a motility, high percentage of normal forms (=10%)). Patient-specific and either recurring or private, sex-chromosomal CNVs are reported as possibly causing spermatogenic failure. See Variant Summary counts for nstd53 in dbVar Variant Summary.
- Publication(s):
- Tüttelmann et al. 2011
Detailed Information: Download 900 Variant Regions, Download 3277 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 80 | 353 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 56 | 129 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 52 | 225 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 32 | 121 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 31 | 110 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 48 | 212 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 53 | 112 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 45 | 235 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 37 | 58 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 47 | 97 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 31 | 187 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 37 | 159 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 14 | 33 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 61 | 292 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 46 | 236 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 55 | 177 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 30 | 94 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 12 | 24 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 35 | 42 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 16 | 87 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 6 | 6 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 26 | 63 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 38 | 57 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 3 | 3 | Remapped | NC_000024.10 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 2 | Remapped | NT_187518.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 2 | Remapped | NT_187646.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 2 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 2 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 1 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 79 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 4 | 17 | Remapped | NT_187523.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 4 | 17 | Remapped | NT_187647.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 5 | 54 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 5 | 54 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 5 | 54 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 5 | 54 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 5 | 54 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 5 | 54 | Remapped | NT_187532.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 5 | 54 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 1 | 1 | Remapped | NW_003871060.2 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 2 | Remapped | NT_167250.2 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 10 | 81 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 4 | 22 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 7 | 30 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 5 | 15 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 1 | 2 | Remapped | NT_167244.2 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 1 | Remapped | NT_187558.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 6 | 34 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 1 | Remapped | NT_187653.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 1 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 1 | 2 | Remapped | NT_187680.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 2 | 2 | Remapped | NT_187576.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 2 | 2 | Remapped | NW_018654717.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 2 | Remapped | NW_003315934.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 5 | Remapped | NT_187583.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 5 | Remapped | NW_011332695.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 3 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 3 | 34 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 11 | Remapped | NT_187587.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 11 | Remapped | NW_003571050.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 18 | 78 | Remapped | NT_187600.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 1 | 1 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 1 | 2 | Remapped | NT_187660.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 1 | 2 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 1 | 1 | Remapped | NT_187607.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 1 | 1 | Remapped | NT_187609.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 2 | 22 | Remapped | NT_187663.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 3 | Remapped | NT_167251.2 |
| NT_187614.1 | Chr17|NT_187614.1 | 4 | 12 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 1 | 1 | Remapped | NW_003315952.3 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 4 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 1 | 1 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 1 | 1 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 1 | Remapped | NW_003571055.2 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 2 | Remapped | NT_187621.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 1 | 1 | Remapped | NW_003571054.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 1 | 1 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 101 | Remapped | NT_187633.1 |
| NT_187667.1 | ChrX|NT_187667.1 | 1 | 4 | Remapped | NT_187667.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 1 | 4 | Remapped | NT_187634.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 87 | 371 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 56 | 129 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 52 | 225 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 32 | 121 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 31 | 110 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 49 | 213 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 44 | 93 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 45 | 235 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 38 | 59 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 47 | 97 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 31 | 187 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 37 | 159 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 14 | 33 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 62 | 329 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 47 | 237 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 49 | 161 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 32 | 97 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 12 | 24 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 34 | 41 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 16 | 87 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 6 | 6 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 27 | 162 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 38 | 57 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 3 | 3 | Remapped | NC_000024.9 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 10 | 62 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 1 | 1 | Remapped | NW_003871056.3 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 1 | 1 | Remapped | NW_003871060.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 2 | Remapped | NT_167250.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 2 | Remapped | NW_004775427.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 2 | 16 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 1 | 2 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 9 | 36 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 12 | 85 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 4 | 22 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 7 | 30 | Remapped | NT_167249.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 6 | 34 | Remapped | NW_003571040.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 2 | 3 | Remapped | NW_003315923.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 2 | 2 | Remapped | NW_003571042.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 1 | 3 | Remapped | NW_003315927.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 2 | Remapped | NW_003315934.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 10 | 40 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 1 | 1 | Remapped | NW_003871069.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 18 | 88 | Remapped | NW_004166863.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 43 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 3 | 11 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 3 | 4 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 1 | Remapped | NW_003571052.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 1 | 17 | Remapped | NW_003871086.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 1 | Remapped | NW_004070872.2 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 4 | 5 | Remapped | NW_003571053.2 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 1 | 1 | Remapped | NW_003571061.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 1 | 1 | Remapped | NW_003571063.2 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 1 | 1 | Remapped | NW_004775435.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 1 | 1 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 2 | 2 | Remapped | NW_004070877.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 1 | 3 | Remapped | NW_004070880.2 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 2 | 9 | Remapped | NW_004070885.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 3 | 4 | Remapped | NW_004070887.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 87 | 371 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 56 | 129 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 52 | 225 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 35 | 143 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 31 | 110 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 49 | 213 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 48 | 100 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 45 | 235 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 38 | 59 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 47 | 97 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 31 | 187 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 37 | 159 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 14 | 33 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 62 | 329 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 47 | 237 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 49 | 161 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 33 | 105 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 12 | 24 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 35 | 42 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 16 | 87 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 8 | 9 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 27 | 162 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 38 | 57 | Submitted | NC_000023.9 |
| NC_000024.8 | ChrY | 3 | 3 | Submitted | NC_000024.8 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 87 | 74 | 2 | 5 | 0 | 6 | 371 | 345 | 3 | 7 | 0 | 16 |
| NC_000002.10 | Chr2 | 56 | 42 | 4 | 10 | 0 | 0 | 129 | 105 | 4 | 20 | 0 | 0 |
| NC_000003.10 | Chr3 | 52 | 44 | 6 | 1 | 0 | 1 | 225 | 168 | 55 | 1 | 0 | 1 |
| NC_000004.10 | Chr4 | 35 | 25 | 2 | 3 | 3 | 2 | 143 | 37 | 2 | 78 | 22 | 4 |
| NC_000005.8 | Chr5 | 31 | 28 | 0 | 1 | 0 | 2 | 110 | 93 | 0 | 1 | 0 | 16 |
| NC_000006.10 | Chr6 | 49 | 33 | 0 | 0 | 0 | 16 | 213 | 112 | 0 | 0 | 0 | 101 |
| NC_000007.12 | Chr7 | 48 | 39 | 5 | 2 | 0 | 2 | 100 | 63 | 8 | 2 | 0 | 27 |
| NC_000008.9 | Chr8 | 45 | 39 | 1 | 1 | 0 | 4 | 235 | 191 | 16 | 23 | 0 | 5 |
| NC_000009.10 | Chr9 | 38 | 35 | 2 | 0 | 0 | 1 | 59 | 53 | 3 | 0 | 0 | 3 |
| NC_000010.9 | Chr10 | 47 | 32 | 0 | 3 | 0 | 12 | 97 | 51 | 0 | 3 | 0 | 43 |
| NC_000011.8 | Chr11 | 31 | 31 | 0 | 0 | 0 | 0 | 187 | 187 | 0 | 0 | 0 | 0 |
| NC_000012.10 | Chr12 | 37 | 33 | 0 | 4 | 0 | 0 | 159 | 154 | 0 | 5 | 0 | 0 |
| NC_000013.9 | Chr13 | 14 | 14 | 0 | 0 | 0 | 0 | 33 | 33 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 62 | 39 | 5 | 0 | 0 | 18 | 329 | 124 | 117 | 0 | 0 | 88 |
| NC_000015.8 | Chr15 | 47 | 35 | 0 | 12 | 0 | 0 | 237 | 80 | 0 | 157 | 0 | 0 |
| NC_000016.8 | Chr16 | 49 | 44 | 0 | 0 | 0 | 5 | 161 | 114 | 0 | 0 | 0 | 47 |
| NC_000017.9 | Chr17 | 33 | 19 | 2 | 3 | 0 | 9 | 105 | 20 | 6 | 10 | 0 | 69 |
| NC_000018.8 | Chr18 | 12 | 12 | 0 | 0 | 0 | 0 | 24 | 24 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 35 | 30 | 0 | 1 | 0 | 4 | 42 | 36 | 0 | 1 | 0 | 5 |
| NC_000020.9 | Chr20 | 16 | 13 | 1 | 1 | 0 | 1 | 87 | 82 | 3 | 1 | 0 | 1 |
| NC_000021.7 | Chr21 | 8 | 4 | 0 | 0 | 2 | 2 | 9 | 4 | 0 | 0 | 3 | 2 |
| NC_000022.9 | Chr22 | 27 | 25 | 0 | 2 | 0 | 0 | 162 | 160 | 0 | 2 | 0 | 0 |
| NC_000023.9 | ChrX | 38 | 27 | 0 | 2 | 0 | 9 | 57 | 36 | 0 | 2 | 0 | 19 |
| NC_000024.8 | ChrY | 3 | 3 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 87 | 58 | 9 | 5 | 4 | 11 | 371 | 234 | 15 | 15 | 5 | 102 |
| NC_000002.10 | Chr2 | 56 | 36 | 7 | 9 | 0 | 4 | 129 | 86 | 7 | 19 | 0 | 17 |
| NC_000003.10 | Chr3 | 52 | 44 | 1 | 1 | 0 | 6 | 225 | 168 | 1 | 1 | 0 | 55 |
| NC_000004.10 | Chr4 | 35 | 25 | 3 | 3 | 3 | 1 | 143 | 37 | 3 | 79 | 22 | 2 |
| NC_000005.8 | Chr5 | 31 | 27 | 1 | 1 | 0 | 2 | 110 | 106 | 1 | 1 | 0 | 2 |
| NC_000006.10 | Chr6 | 49 | 32 | 0 | 0 | 1 | 16 | 213 | 121 | 0 | 0 | 1 | 91 |
| NC_000007.12 | Chr7 | 48 | 35 | 4 | 3 | 0 | 6 | 100 | 59 | 4 | 6 | 0 | 31 |
| NC_000008.9 | Chr8 | 45 | 37 | 1 | 2 | 0 | 5 | 235 | 189 | 16 | 24 | 0 | 6 |
| NC_000009.10 | Chr9 | 38 | 35 | 1 | 1 | 1 | 0 | 59 | 53 | 3 | 2 | 1 | 0 |
| NC_000010.9 | Chr10 | 47 | 33 | 0 | 13 | 0 | 1 | 97 | 52 | 0 | 43 | 0 | 2 |
| NC_000011.8 | Chr11 | 31 | 26 | 3 | 0 | 0 | 2 | 187 | 176 | 3 | 0 | 0 | 8 |
| NC_000012.10 | Chr12 | 37 | 32 | 0 | 0 | 0 | 5 | 159 | 114 | 0 | 0 | 0 | 45 |
| NC_000013.9 | Chr13 | 14 | 13 | 1 | 0 | 0 | 0 | 33 | 32 | 1 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 62 | 23 | 12 | 7 | 1 | 19 | 329 | 68 | 16 | 129 | 37 | 79 |
| NC_000015.8 | Chr15 | 47 | 34 | 0 | 11 | 1 | 1 | 237 | 75 | 3 | 156 | 1 | 2 |
| NC_000016.8 | Chr16 | 49 | 41 | 1 | 5 | 0 | 2 | 161 | 111 | 1 | 47 | 0 | 2 |
| NC_000017.9 | Chr17 | 33 | 19 | 3 | 6 | 0 | 5 | 105 | 21 | 44 | 15 | 0 | 25 |
| NC_000018.8 | Chr18 | 12 | 11 | 0 | 0 | 0 | 1 | 24 | 20 | 0 | 0 | 0 | 4 |
| NC_000019.8 | Chr19 | 35 | 30 | 3 | 0 | 0 | 2 | 42 | 36 | 3 | 0 | 0 | 3 |
| NC_000020.9 | Chr20 | 16 | 14 | 1 | 1 | 0 | 0 | 87 | 83 | 3 | 1 | 0 | 0 |
| NC_000021.7 | Chr21 | 8 | 5 | 0 | 0 | 2 | 1 | 9 | 5 | 0 | 0 | 3 | 1 |
| NC_000022.9 | Chr22 | 27 | 17 | 4 | 4 | 0 | 2 | 162 | 151 | 4 | 5 | 0 | 2 |
| NC_000023.9 | ChrX | 38 | 19 | 11 | 7 | 0 | 1 | 57 | 19 | 19 | 15 | 0 | 4 |
| NC_000024.8 | ChrY | 3 | 3 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 3
- Sampleset ID:
- 1
- Name:
- CONTROL
- Sampleset Type:
- Control
- Description:
- Healthy controls with normal semen parameters: =20 Mill./ml sperm concentration, =40 Mill. total sperm count, =2 ml semen volume, =50% of grade a+b or =25% grade a motility, high percentage of normal forms (=10%)
- Size:
- 100
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| CONTROL_46 | CONTROL_46 | Male | Caucasian | Not reported |
| CONTROL_92 | CONTROL_92 | Male | Caucasian | Not reported |
| CONTROL_41 | CONTROL_41 | Male | Caucasian | Not reported |
| CONTROL_40 | CONTROL_40 | Male | Caucasian | Not reported |
| CONTROL_88 | CONTROL_88 | Male | Caucasian | Not reported |
| CONTROL_21 | CONTROL_21 | Male | Caucasian | Not reported |
| CONTROL_85 | CONTROL_85 | Male | Caucasian | Not reported |
| CONTROL_44 | CONTROL_44 | Male | Caucasian | Not reported |
| CONTROL_13 | CONTROL_13 | Male | Caucasian | Not reported |
| CONTROL_26 | CONTROL_26 | Male | Caucasian | Not reported |
| CONTROL_79 | CONTROL_79 | Male | Caucasian | Not reported |
| CONTROL_09 | CONTROL_09 | Male | Caucasian | Not reported |
| CONTROL_23 | CONTROL_23 | Male | Caucasian | Not reported |
| CONTROL_96 | CONTROL_96 | Male | Caucasian | Not reported |
| CONTROL_12 | CONTROL_12 | Male | Caucasian | Not reported |
| CONTROL_84 | CONTROL_84 | Male | Caucasian | Not reported |
| CONTROL_65 | CONTROL_65 | Male | Caucasian | Not reported |
| CONTROL_37 | CONTROL_37 | Male | Caucasian | Not reported |
| CONTROL_64 | CONTROL_64 | Male | Caucasian | Not reported |
| CONTROL_47 | CONTROL_47 | Male | Caucasian | Not reported |
| CONTROL_10 | CONTROL_10 | Male | Caucasian | Not reported |
| CONTROL_73 | CONTROL_73 | Male | Caucasian | Not reported |
| CONTROL_01 | CONTROL_01 | Male | Caucasian | Not reported |
| CONTROL_57 | CONTROL_57 | Male | Caucasian | Not reported |
| CONTROL_62 | CONTROL_62 | Male | Caucasian | Not reported |
| CONTROL_74 | CONTROL_74 | Male | Caucasian | Not reported |
| CONTROL_35 | CONTROL_35 | Male | Caucasian | Not reported |
| CONTROL_86 | CONTROL_86 | Male | Caucasian | Not reported |
| CONTROL_56 | CONTROL_56 | Male | Caucasian | Not reported |
| CONTROL_19 | CONTROL_19 | Male | Caucasian | Not reported |
| CONTROL_60 | CONTROL_60 | Male | Caucasian | Not reported |
| CONTROL_27 | CONTROL_27 | Male | Caucasian | Not reported |
| CONTROL_50 | CONTROL_50 | Male | Caucasian | Not reported |
| CONTROL_72 | CONTROL_72 | Male | Caucasian | Not reported |
| CONTROL_58 | CONTROL_58 | Male | Caucasian | Not reported |
| CONTROL_82 | CONTROL_82 | Male | Caucasian | Not reported |
| CONTROL_08 | CONTROL_08 | Male | Caucasian | Not reported |
| CONTROL_63 | CONTROL_63 | Male | Caucasian | Not reported |
| CONTROL_71 | CONTROL_71 | Male | Caucasian | Not reported |
| CONTROL_89 | CONTROL_89 | Male | Caucasian | Not reported |
| CONTROL_34 | CONTROL_34 | Male | Caucasian | Not reported |
| CONTROL_18 | CONTROL_18 | Male | Caucasian | Not reported |
| CONTROL_28 | CONTROL_28 | Male | Caucasian | Not reported |
| CONTROL_93 | CONTROL_93 | Male | Caucasian | Not reported |
| CONTROL_51 | CONTROL_51 | Male | Caucasian | Not reported |
| CONTROL_100 | CONTROL_100 | Male | Caucasian | Not reported |
| CONTROL_80 | CONTROL_80 | Male | Caucasian | Not reported |
| CONTROL_24 | CONTROL_24 | Male | Caucasian | Not reported |
| CONTROL_97 | CONTROL_97 | Male | Caucasian | Not reported |
| CONTROL_17 | CONTROL_17 | Male | Caucasian | Not reported |
| CONTROL_42 | CONTROL_42 | Male | Caucasian | Not reported |
| CONTROL_76 | CONTROL_76 | Male | Caucasian | Not reported |
| CONTROL_05 | CONTROL_05 | Male | Caucasian | Not reported |
| CONTROL_66 | CONTROL_66 | Male | Caucasian | Not reported |
| CONTROL_53 | CONTROL_53 | Male | Caucasian | Not reported |
| CONTROL_83 | CONTROL_83 | Male | Caucasian | Not reported |
| CONTROL_29 | CONTROL_29 | Male | Caucasian | Not reported |
| CONTROL_67 | CONTROL_67 | Male | Caucasian | Not reported |
| CONTROL_54 | CONTROL_54 | Male | Caucasian | Not reported |
| CONTROL_14 | CONTROL_14 | Male | Caucasian | Not reported |
| CONTROL_32 | CONTROL_32 | Male | Caucasian | Not reported |
| CONTROL_61 | CONTROL_61 | Male | Caucasian | Not reported |
| CONTROL_03 | CONTROL_03 | Male | Caucasian | Not reported |
| CONTROL_59 | CONTROL_59 | Male | Caucasian | Not reported |
| CONTROL_31 | CONTROL_31 | Male | Caucasian | Not reported |
| CONTROL_48 | CONTROL_48 | Male | Caucasian | Not reported |
| CONTROL_20 | CONTROL_20 | Male | Caucasian | Not reported |
| CONTROL_45 | CONTROL_45 | Male | Caucasian | Not reported |
| CONTROL_98 | CONTROL_98 | Male | Caucasian | Not reported |
| CONTROL_81 | CONTROL_81 | Male | Caucasian | Not reported |
| CONTROL_99 | CONTROL_99 | Male | Caucasian | Not reported |
| CONTROL_87 | CONTROL_87 | Male | Caucasian | Not reported |
| CONTROL_36 | CONTROL_36 | Male | Caucasian | Not reported |
| CONTROL_52 | CONTROL_52 | Male | Caucasian | Not reported |
| CONTROL_69 | CONTROL_69 | Male | Caucasian | Not reported |
| CONTROL_75 | CONTROL_75 | Male | Caucasian | Not reported |
| CONTROL_25 | CONTROL_25 | Male | Caucasian | Not reported |
| CONTROL_16 | CONTROL_16 | Male | Caucasian | Not reported |
| CONTROL_11 | CONTROL_11 | Male | Caucasian | Not reported |
| CONTROL_95 | CONTROL_95 | Male | Caucasian | Not reported |
| CONTROL_30 | CONTROL_30 | Male | Caucasian | Not reported |
| CONTROL_07 | CONTROL_07 | Male | Caucasian | Not reported |
| CONTROL_02 | CONTROL_02 | Male | Caucasian | Not reported |
| CONTROL_55 | CONTROL_55 | Male | Caucasian | Not reported |
| CONTROL_33 | CONTROL_33 | Male | Caucasian | Not reported |
| CONTROL_38 | CONTROL_38 | Male | Caucasian | Not reported |
| CONTROL_68 | CONTROL_68 | Male | Caucasian | Not reported |
| CONTROL_70 | CONTROL_70 | Male | Caucasian | Not reported |
| CONTROL_15 | CONTROL_15 | Male | Caucasian | Not reported |
| CONTROL_90 | CONTROL_90 | Male | Caucasian | Not reported |
| CONTROL_04 | CONTROL_04 | Male | Caucasian | Not reported |
| CONTROL_78 | CONTROL_78 | Male | Caucasian | Not reported |
| CONTROL_49 | CONTROL_49 | Male | Caucasian | Not reported |
| CONTROL_39 | CONTROL_39 | Male | Caucasian | Not reported |
| CONTROL_22 | CONTROL_22 | Male | Caucasian | Not reported |
| CONTROL_91 | CONTROL_91 | Male | Caucasian | Not reported |
| CONTROL_43 | CONTROL_43 | Male | Caucasian | Not reported |
| CONTROL_77 | CONTROL_77 | Male | Caucasian | Not reported |
| CONTROL_06 | CONTROL_06 | Male | Caucasian | Not reported |
| CONTROL_94 | CONTROL_94 | Male | Caucasian | Not reported |
- Sampleset ID:
- 2
- Name:
- OAT
- Sampleset Type:
- Case
- Description:
- Infertile patients with severe oligozoospermia
- Size:
- 89
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Infertility, Male
Oligospermia - Sex:
- Male
- Sampleset ID:
- 3
- Name:
- SCOS
- Sampleset Type:
- Case
- Description:
- Infertile patients with complete, bilateral Sertoli-cell-only syndrome
- Size:
- 37
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Azoospermia
Infertility, Male
Sertoli Cell-Only Syndrome - Sex:
- Male
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | Agilent-014693 Human Genome CGH Microarray 244A (Feature number version), Agilent-021850 SurePrint G3 Human CGH Microarray 2x400K | GEO | 3,277 |