Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv3890452

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 458 SVs from 24 studies. See in: genome view

Remapped(Score: Perfect):154,688,797-154,688,797

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3890452	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	154,688,797	154,688,797
esv3890452	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	153,917,072	153,917,072

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv25733601	sva insertion	HG01080	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,389

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv25733601	Remapped	Perfect	NC_000023.11:g.154 688797_154688798in s1513	GRCh38.p12	First Pass	NC_000023.11	ChrX	154,688,797	154,688,797
essv25733601	Submitted genomic		NC_000023.10:g.153 917072_153917073in s1513	GRCh37 (hg19)		NC_000023.10	ChrX	153,917,072	153,917,072

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

You are here: NCBI