esv3310372
- Organism: Homo sapiens
- Study:estd59 (1000 Genomes Consortium Pilot Project)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):1000 Genomes Project Consortium et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 189 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 189 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3310372 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 6,743,804 (-23, +23) | 6,743,804 (-23, +23) |
| esv3310372 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 6,793,805 (-23, +23) | 6,793,805 (-23, +23) |
| esv3310372 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 6,733,806 (-23, +23) | 6,733,806 (-23, +23) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7839422 | mobile element insertion | SAMN00801888 | Sequencing | Split read mapping | 69,298 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7839422 | Remapped | Perfect | NC_000016.10:g.(67 43781_6743827)_(67 43781_6743827)ins? | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 6,743,804 (-23, +23) | 6,743,804 (-23, +23) |
| essv7839422 | Remapped | Perfect | NC_000016.9:g.(679 3782_6793828)_(679 3782_6793828)ins? | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 6,793,805 (-23, +23) | 6,793,805 (-23, +23) |
| essv7839422 | Submitted genomic | NC_000016.8:g.(673 3783_6733829)_(673 3783_6733829)ins? | NCBI36 (hg18) | NC_000016.8 | Chr16 | 6,733,806 (-23, +23) | 6,733,806 (-23, +23) |