esv3310578
- Organism: Homo sapiens
- Study:estd59 (1000 Genomes Consortium Pilot Project)
- Variant Type:novel sequence insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:701
- Publication(s):1000 Genomes Project Consortium et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 114 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv3310578 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 169,988,976 | 169,989,676 | 169,988,976 | 169,989,676 |
| esv3310578 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 169,706,764 | 169,707,464 | 169,706,764 | 169,707,464 |
| esv3310578 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 171,189,458 | 171,190,158 | 171,189,458 | 171,190,158 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7843516 | novel sequence insertion | SAMN00001696 | Sequencing | Paired-end mapping | 44,056 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv7843516 | Remapped | Perfect | NC_000003.12:g.(16 9988976_169989676) _(169988976_169989 676)ins460 | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 169,988,976 | 169,989,676 | 169,988,976 | 169,989,676 |
| essv7843516 | Remapped | Perfect | NC_000003.11:g.(16 9706764_169707464) _(169706764_169707 464)ins460 | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 169,706,764 | 169,707,464 | 169,706,764 | 169,707,464 |
| essv7843516 | Submitted genomic | NC_000003.10:g.(17 1189458_171190158) _(171189458_171190 158)ins460 | NCBI36 (hg18) | NC_000003.10 | Chr3 | 171,189,458 | 171,190,158 | 171,189,458 | 171,190,158 |