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dbVar

Database of genomic structural variation

esv3829502

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:92,897

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 327 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):19,814,939-19,908,835

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3829502	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	19,815,439 (-500, +0)	19,908,335 (-0, +500)
esv3829502	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	19,856,931 (-500, +0)	19,949,827 (-0, +500)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv18213919	deletion	HG00319	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,162

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv18213919	Remapped	Perfect	NC_000003.12:g.(19 814939_19815439)_( 19908335_19908835) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	19,815,439 (-500, +0)	19,908,335 (-0, +500)
essv18213919	Submitted genomic		NC_000003.11:g.(19 856431_19856931)_( 19949827_19950327) del	GRCh37 (hg19)		NC_000003.11	Chr3	19,856,931 (-500, +0)	19,949,827 (-0, +500)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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