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dbVar

Database of genomic structural variation

esv3861942

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:11,025

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 139 SVs from 33 studies. See in: genome view

Remapped(Score: Perfect):107,880,963-107,892,046

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3861942	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	107,880,992 (-29, +30)	107,892,016 (-29, +30)
esv3861942	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	109,640,750 (-29, +30)	109,651,774 (-29, +30)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv22140408	deletion	HG00620	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,139
essv22140409	deletion	HG01912	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,224

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv22140408	Remapped	Perfect	NC_000010.11:g.(10 7880963_107881022) _(107891987_107892 046)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	107,880,992 (-29, +30)	107,892,016 (-29, +30)
essv22140409	Remapped	Perfect	NC_000010.11:g.(10 7880963_107881022) _(107891987_107892 046)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	107,880,992 (-29, +30)	107,892,016 (-29, +30)
essv22140408	Submitted genomic		NC_000010.10:g.(10 9640721_109640780) _(109651745_109651 804)del	GRCh37 (hg19)		NC_000010.10	Chr10	109,640,750 (-29, +30)	109,651,774 (-29, +30)
essv22140409	Submitted genomic		NC_000010.10:g.(10 9640721_109640780) _(109651745_109651 804)del	GRCh37 (hg19)		NC_000010.10	Chr10	109,640,750 (-29, +30)	109,651,774 (-29, +30)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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