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dbVar

Database of genomic structural variation

esv3877713

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:89,581

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 350 SVs from 51 studies. See in: genome view

Remapped(Score: Perfect):63,492,174-63,581,812

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3877713	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	63,492,203 (-29, +29)	63,581,783 (-29, +29)
esv3877713	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	63,526,107 (-29, +29)	63,615,687 (-29, +29)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv24029028	deletion	HG01312	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,106

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv24029028	Remapped	Perfect	NC_000016.10:g.(63 492174_63492232)_( 63581754_63581812) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	63,492,203 (-29, +29)	63,581,783 (-29, +29)
essv24029028	Submitted genomic		NC_000016.9:g.(635 26078_63526136)_(6 3615658_63615716)d el	GRCh37 (hg19)		NC_000016.9	Chr16	63,526,107 (-29, +29)	63,615,687 (-29, +29)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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