nsv1036069
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:58,864
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 233 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 233 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1036069 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 103,398,289 | 103,457,152 |
| nsv1036069 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 105,158,046 | 105,216,909 |
| nsv1036069 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 105,148,036 | 105,206,899 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3504887 | copy number gain | SNP array | Probe signal intensity |
| nssv3706210 | copy number gain | SNP array | Probe signal intensity |
| nssv3706211 | copy number gain | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3504887 | Remapped | Perfect | NC_000010.11:g.(?_ 103398289)_(103457 152_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 103,398,289 | 103,457,152 |
| nssv3706210 | Remapped | Perfect | NC_000010.11:g.(?_ 103398289)_(103457 152_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 103,398,289 | 103,457,152 |
| nssv3706211 | Remapped | Perfect | NC_000010.11:g.(?_ 103398289)_(103457 152_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 103,398,289 | 103,457,152 |
| nssv3504887 | Remapped | Perfect | NC_000010.10:g.(?_ 105158046)_(105216 909_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 105,158,046 | 105,216,909 |
| nssv3706210 | Remapped | Perfect | NC_000010.10:g.(?_ 105158046)_(105216 909_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 105,158,046 | 105,216,909 |
| nssv3706211 | Remapped | Perfect | NC_000010.10:g.(?_ 105158046)_(105216 909_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 105,158,046 | 105,216,909 |
| nssv3504887 | Submitted genomic | NC_000010.9:g.(?_1 05148036)_(1052068 99_?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 105,148,036 | 105,206,899 | ||
| nssv3706210 | Submitted genomic | NC_000010.9:g.(?_1 05148036)_(1052068 99_?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 105,148,036 | 105,206,899 | ||
| nssv3706211 | Submitted genomic | NC_000010.9:g.(?_1 05148036)_(1052068 99_?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 105,148,036 | 105,206,899 |