nsv1036409
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:500,513
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4256 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 4393 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 1066 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1036409 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 22,007,752 | 22,508,264 |
| nsv1036409 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 22,475,991 | 22,977,249 |
| nsv1036409 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 21,545,831 | 22,047,089 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3532171 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3532171 | Remapped | Good | NC_000014.9:g.(?_2 2007752)_(22508264 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 22,007,752 | 22,508,264 |
| nssv3532171 | Remapped | Perfect | NC_000014.8:g.(?_2 2475991)_(22977249 _?)del | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 22,475,991 | 22,977,249 |
| nssv3532171 | Submitted genomic | NC_000014.7:g.(?_2 1545831)_(22047089 _?)del | NCBI36 (hg18) | NC_000014.7 | Chr14 | 21,545,831 | 22,047,089 |