nsv1020842
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:134,497
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2467 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 2471 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 712 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1020842 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nsv1020842 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nsv1020842 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3690526 | copy number loss | SNP array | Probe signal intensity |
| nssv3690527 | copy number loss | SNP array | Probe signal intensity |
| nssv3690528 | copy number loss | SNP array | Probe signal intensity |
| nssv3690529 | copy number loss | SNP array | Probe signal intensity |
| nssv3690530 | copy number loss | SNP array | Probe signal intensity |
| nssv3690531 | copy number loss | SNP array | Probe signal intensity |
| nssv3690532 | copy number loss | SNP array | Probe signal intensity |
| nssv3690533 | copy number loss | SNP array | Probe signal intensity |
| nssv3690534 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3690526 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690527 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690528 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690529 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690530 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690531 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690532 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690533 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690534 | Remapped | Perfect | NC_000009.12:g.(?_ 11992592)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690526 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690527 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690528 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690529 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690530 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690531 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690532 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690533 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690534 | Remapped | Perfect | NC_000009.11:g.(?_ 11992592)_(1212708 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,992,592 | 12,127,088 |
| nssv3690526 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690527 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690528 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690529 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690530 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690531 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690532 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690533 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 | ||
| nssv3690534 | Submitted genomic | NC_000009.10:g.(?_ 11982592)_(1211708 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,982,592 | 12,117,088 |