nsv1000770
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:165,678
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 842 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 842 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 328 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1000770 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nsv1000770 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nsv1000770 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3736436 | copy number gain | SNP array | Probe signal intensity |
| nssv3736437 | copy number gain | SNP array | Probe signal intensity |
| nssv3736438 | copy number gain | SNP array | Probe signal intensity |
| nssv3736439 | copy number gain | SNP array | Probe signal intensity |
| nssv3736440 | copy number gain | SNP array | Probe signal intensity |
| nssv3736441 | copy number gain | SNP array | Probe signal intensity |
| nssv3736442 | copy number gain | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3736436 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736437 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736438 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736439 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736440 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736441 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736442 | Remapped | Perfect | NC_000003.12:g.(?_ 130011844)_(130177 521_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 130,011,844 | 130,177,521 |
| nssv3736436 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736437 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736438 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736439 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736440 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736441 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736442 | Remapped | Perfect | NC_000003.11:g.(?_ 129730687)_(129896 364_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,730,687 | 129,896,364 |
| nssv3736436 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736437 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736438 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736439 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736440 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736441 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 | ||
| nssv3736442 | Submitted genomic | NC_000003.10:g.(?_ 131213377)_(131379 054_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 131,213,377 | 131,379,054 |